| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is capM [H]
Identifier: 113474876
GI number: 113474876
Start: 1728100
End: 1729266
Strand: Direct
Name: capM [H]
Synonym: Tery_1099
Alternate gene names: 113474876
Gene position: 1728100-1729266 (Clockwise)
Preceding gene: 113474874
Following gene: 113474878
Centisome position: 22.3
GC content: 32.9
Gene sequence:
>1167_bases ATGAAAATATTAATCGCTAGCCATACCTATATTGTTGACCTTAATCGGGAAAAGTTACGAGCTTTAGCTAAACTTGAACC AGGTCTTGAAGTTAGGGTTGTTGTACCTCGTCGCTGGAATCCAAAAGGCGTACAAAGTGAAATAGTTGAAACTAAATTTA TTGATGAGGGTTCTTTTAAAGTAATACCTCTTTCTAATTATAGTCAAAATAATCAAGCTTTGCTAACTTTCGGTCCCGAA CTAATTAGTTTGCTACGAAAATTTAAGCCGGATATTATTCAAGTAGAACAGGGTTCTAAAGCTTTAACTTATGCTCAATT TATTACTTTTAATAAGCTTTTAGGACTCCAGGCTAAAAATTTATTTTTTACTTGGTGGAATTTACCTTATGAACTCAAAT TTCCTATTTCTTACCTAGAAAGCTATAACTTGAGAAATACTGATGGAATTGTTGCTGGAAATAAAGATGGAGAAAAAATT TTAAGAAATAAGGGATACAAAGGTCTGATTAAAGTGATGCCTCAGTTAGGAGTAGATGAAAGTTTATTTAAACCAGAACC TCAAGTAGAATTAAGAGATAGTTTAGGAATTAAAGATGATGATTTTGTAGTTGGTTTTGTGGGTCGTTTTGTTCAGGAAA AAGGATTATTAACTTTAACTAAATCCCTAGCAGGTTTACAGGAAAAAAATTGGAAGTGCTTGTTATTGGGTAGGGGTGAA TTACAAGCAACTTTGTGGGAAATAGCAACAGCATTAGGAATTAAGGAGCGTTTGATTTTTGTAGAAAGTGTTCCTCACAA CTATGTACAAAAATATATTAATTTGATGAATACTTTGGTTTTACCGTCAGAAACTACTTATAAGTTTAAAACTTTAACTT CTGTGGGTTGGAAAGAACAATTCGGTCATGTTTTAATTGAGGCAATGGCTTGTAAGGTACCTGTAATAGGTTCTGATTCT GGAGAAATTCCTAATGTAATTGGGGATGTTGGTTTGGTTTTTCCAGAGGGAAATATTGAAGAGTTGAGGAATTGTTTAAT GCAGTTAATGGAACAAAAAGAATTAGCCGAAAGTTTAGGAGAAAAAGGCTATAAAAAGGCAATGAGTCAGTATACAAATA AGTCTTTAGCTAGGCAATTATTAAGTTTTTATCAGGAGTTGCTGTAG
Upstream 100 bases:
>100_bases TTTTTTGTCAAAAAAAATGTGTCAGCTTTTTACTCCAAACTAACTCAATTTTGAGCTACAATTCCTATAAATATATCTTC TAAATCACAAAAAAATAACT
Downstream 100 bases:
>100_bases ATAAGCTGAAAAATAATAAGTGAGGCTGTAGCAATTCCCATAAGGATAAATATTTAACTAAAAAATTACTTGGTTTTAGG AAATATTTAATTAGGAACAA
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 388
Protein sequence:
>388_residues MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL
Sequences:
>Translated_388_residues MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL >Mature_388_residues MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: NA
Molecular weight: Translated: 43999; Mature: 43999
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFK CEEEEECCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHEECCCCEE VIPLSNYSQNNQALLTFGPELISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKN EEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC LFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKILRNKGYKGLIKVMPQLGVDE EEEEEECCCEEEECCHHHHHCCCCCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC SLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE HHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCH LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQ HHHHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHH FGHVLIEAMACKVPVIGSDSGEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLG HHHHHHHHHHHCCEEECCCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH EKGYKKAMSQYTNKSLARQLLSFYQELL HHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFK CEEEEECCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHEECCCCEE VIPLSNYSQNNQALLTFGPELISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKN EEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC LFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKILRNKGYKGLIKVMPQLGVDE EEEEEECCCEEEECCHHHHHCCCCCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC SLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE HHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCH LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQ HHHHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHH FGHVLIEAMACKVPVIGSDSGEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLG HHHHHHHHHHHCCEEECCCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH EKGYKKAMSQYTNKSLARQLLSFYQELL HHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]