Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is capM [H]

Identifier: 113474876

GI number: 113474876

Start: 1728100

End: 1729266

Strand: Direct

Name: capM [H]

Synonym: Tery_1099

Alternate gene names: 113474876

Gene position: 1728100-1729266 (Clockwise)

Preceding gene: 113474874

Following gene: 113474878

Centisome position: 22.3

GC content: 32.9

Gene sequence:

>1167_bases
ATGAAAATATTAATCGCTAGCCATACCTATATTGTTGACCTTAATCGGGAAAAGTTACGAGCTTTAGCTAAACTTGAACC
AGGTCTTGAAGTTAGGGTTGTTGTACCTCGTCGCTGGAATCCAAAAGGCGTACAAAGTGAAATAGTTGAAACTAAATTTA
TTGATGAGGGTTCTTTTAAAGTAATACCTCTTTCTAATTATAGTCAAAATAATCAAGCTTTGCTAACTTTCGGTCCCGAA
CTAATTAGTTTGCTACGAAAATTTAAGCCGGATATTATTCAAGTAGAACAGGGTTCTAAAGCTTTAACTTATGCTCAATT
TATTACTTTTAATAAGCTTTTAGGACTCCAGGCTAAAAATTTATTTTTTACTTGGTGGAATTTACCTTATGAACTCAAAT
TTCCTATTTCTTACCTAGAAAGCTATAACTTGAGAAATACTGATGGAATTGTTGCTGGAAATAAAGATGGAGAAAAAATT
TTAAGAAATAAGGGATACAAAGGTCTGATTAAAGTGATGCCTCAGTTAGGAGTAGATGAAAGTTTATTTAAACCAGAACC
TCAAGTAGAATTAAGAGATAGTTTAGGAATTAAAGATGATGATTTTGTAGTTGGTTTTGTGGGTCGTTTTGTTCAGGAAA
AAGGATTATTAACTTTAACTAAATCCCTAGCAGGTTTACAGGAAAAAAATTGGAAGTGCTTGTTATTGGGTAGGGGTGAA
TTACAAGCAACTTTGTGGGAAATAGCAACAGCATTAGGAATTAAGGAGCGTTTGATTTTTGTAGAAAGTGTTCCTCACAA
CTATGTACAAAAATATATTAATTTGATGAATACTTTGGTTTTACCGTCAGAAACTACTTATAAGTTTAAAACTTTAACTT
CTGTGGGTTGGAAAGAACAATTCGGTCATGTTTTAATTGAGGCAATGGCTTGTAAGGTACCTGTAATAGGTTCTGATTCT
GGAGAAATTCCTAATGTAATTGGGGATGTTGGTTTGGTTTTTCCAGAGGGAAATATTGAAGAGTTGAGGAATTGTTTAAT
GCAGTTAATGGAACAAAAAGAATTAGCCGAAAGTTTAGGAGAAAAAGGCTATAAAAAGGCAATGAGTCAGTATACAAATA
AGTCTTTAGCTAGGCAATTATTAAGTTTTTATCAGGAGTTGCTGTAG

Upstream 100 bases:

>100_bases
TTTTTTGTCAAAAAAAATGTGTCAGCTTTTTACTCCAAACTAACTCAATTTTGAGCTACAATTCCTATAAATATATCTTC
TAAATCACAAAAAAATAACT

Downstream 100 bases:

>100_bases
ATAAGCTGAAAAATAATAAGTGAGGCTGTAGCAATTCCCATAAGGATAAATATTTAACTAAAAAATTACTTGGTTTTAGG
AAATATTTAATTAGGAACAA

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE
LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI
LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE
LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS
GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL

Sequences:

>Translated_388_residues
MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE
LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI
LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE
LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS
GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL
>Mature_388_residues
MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFKVIPLSNYSQNNQALLTFGPE
LISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKNLFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKI
LRNKGYKGLIKVMPQLGVDESLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE
LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQFGHVLIEAMACKVPVIGSDS
GEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLGEKGYKKAMSQYTNKSLARQLLSFYQELL

Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: NA

Molecular weight: Translated: 43999; Mature: 43999

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFK
CEEEEECCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHEECCCCEE
VIPLSNYSQNNQALLTFGPELISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKN
EEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC
LFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKILRNKGYKGLIKVMPQLGVDE
EEEEEECCCEEEECCHHHHHCCCCCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC
SLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE
HHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCH
LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQ
HHHHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHH
FGHVLIEAMACKVPVIGSDSGEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLG
HHHHHHHHHHHCCEEECCCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EKGYKKAMSQYTNKSLARQLLSFYQELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MKILIASHTYIVDLNREKLRALAKLEPGLEVRVVVPRRWNPKGVQSEIVETKFIDEGSFK
CEEEEECCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHEECCCCEE
VIPLSNYSQNNQALLTFGPELISLLRKFKPDIIQVEQGSKALTYAQFITFNKLLGLQAKN
EEECCCCCCCCCEEEEECHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCC
LFFTWWNLPYELKFPISYLESYNLRNTDGIVAGNKDGEKILRNKGYKGLIKVMPQLGVDE
EEEEEECCCEEEECCHHHHHCCCCCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHCCCCC
SLFKPEPQVELRDSLGIKDDDFVVGFVGRFVQEKGLLTLTKSLAGLQEKNWKCLLLGRGE
HHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEECCH
LQATLWEIATALGIKERLIFVESVPHNYVQKYINLMNTLVLPSETTYKFKTLTSVGWKEQ
HHHHHHHHHHHHCHHHHEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHCCHHHH
FGHVLIEAMACKVPVIGSDSGEIPNVIGDVGLVFPEGNIEELRNCLMQLMEQKELAESLG
HHHHHHHHHHHCCEEECCCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
EKGYKKAMSQYTNKSLARQLLSFYQELL
HHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961465 [H]