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The map label for this gene is yhdW [H]

Identifier: 113474836

GI number: 113474836

Start: 1647640

End: 1648356

Strand: Reverse

Name: yhdW [H]

Synonym: Tery_1053

Alternate gene names: 113474836

Gene position: 1648356-1647640 (Counterclockwise)

Preceding gene: 113474841

Following gene: 113474835

Centisome position: 21.27

GC content: 29.01

Gene sequence:

>717_bases
ATGACTACTAAACCATTAATTATTGCTCATCGCGGTGCATCTGGCTTGGTAAAATTTGAAAATACTTTAGCATCTTTTGC
TAAAGCTATTGAGTTAGGTGTTTCAATGGTAGAGTTTGATGTTAGAAAAACTCAGGATAATTTATTGGTTGCCTTTCATG
ATGAATCAATTGATGGGATAAAACTTAGGGATTTGACTTATCAACAACTTTTAAATATTTCACAGAAAAAAGGTTTTGAT
GTGCCATTAGTAGAAGATGTACTTAAGCTGTGTCAGAGGAAAATTAAACTTGATATTGAATTGAAAGAAGCCGGATATGA
ATTGGAGATAGTTAATTTAGTTAAAAAATATTTAGATTATCAAGATTATGTCATTAAATCTTTTATTGATACTGCGATTA
TCACCCTTAAAAAAACTGATAACAAAATTACAACTGGTCTATTACTAGGACTGGGGAATCCCCAAAATTTCATCCTTACT
CGATTATCAGAAATTTTTCCAGAATTTCGTTTACTTCTAACTAAAGCTGATTTTGTTTCTCCTAATTATCAATTAATAAA
ATTAGGTTTTGTGTGGCGGATGAAAATTCTTAATAAGAATATCTATGTTTGGACGATTAATGATGAAAAATTAATGTCTA
AAATTATTAAGAAAGGAATATTTGCATTAATTACAGACAGGCCAGATTTAGCTTTGAAGTTATTTGATAGTAATTAA

Upstream 100 bases:

>100_bases
TCGGTGTATCTGTCATGGTTACTCTATTTATATAGCGCTACATCTAGATTAAACTAAATATTAGGAATTAAAAAGTTGAG
TATCACAAAAATCAAATAAA

Downstream 100 bases:

>100_bases
TATTTAGCTATTATTTTTTAATTTTTCCTATTCTTGGCTTTCGGACAGTTCATCAATTAGTTAGATATAAATTAAACACC
AAATTAAAATTCCTACATCT

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTTKPLIIAHRGASGLVKFENTLASFAKAIELGVSMVEFDVRKTQDNLLVAFHDESIDGIKLRDLTYQQLLNISQKKGFD
VPLVEDVLKLCQRKIKLDIELKEAGYELEIVNLVKKYLDYQDYVIKSFIDTAIITLKKTDNKITTGLLLGLGNPQNFILT
RLSEIFPEFRLLLTKADFVSPNYQLIKLGFVWRMKILNKNIYVWTINDEKLMSKIIKKGIFALITDRPDLALKLFDSN

Sequences:

>Translated_238_residues
MTTKPLIIAHRGASGLVKFENTLASFAKAIELGVSMVEFDVRKTQDNLLVAFHDESIDGIKLRDLTYQQLLNISQKKGFD
VPLVEDVLKLCQRKIKLDIELKEAGYELEIVNLVKKYLDYQDYVIKSFIDTAIITLKKTDNKITTGLLLGLGNPQNFILT
RLSEIFPEFRLLLTKADFVSPNYQLIKLGFVWRMKILNKNIYVWTINDEKLMSKIIKKGIFALITDRPDLALKLFDSN
>Mature_237_residues
TTKPLIIAHRGASGLVKFENTLASFAKAIELGVSMVEFDVRKTQDNLLVAFHDESIDGIKLRDLTYQQLLNISQKKGFDV
PLVEDVLKLCQRKIKLDIELKEAGYELEIVNLVKKYLDYQDYVIKSFIDTAIITLKKTDNKITTGLLLGLGNPQNFILTR
LSEIFPEFRLLLTKADFVSPNYQLIKLGFVWRMKILNKNIYVWTINDEKLMSKIIKKGIFALITDRPDLALKLFDSN

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Caenorhabditis elegans, GI17542344, Length=274, Percent_Identity=26.6423357664234, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27287; Mature: 27155

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTKPLIIAHRGASGLVKFENTLASFAKAIELGVSMVEFDVRKTQDNLLVAFHDESIDGI
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCHHHEEHHHEECCCCEEEEEECCCCCCE
KLRDLTYQQLLNISQKKGFDVPLVEDVLKLCQRKIKLDIELKEAGYELEIVNLVKKYLDY
EEECCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHCH
QDYVIKSFIDTAIITLKKTDNKITTGLLLGLGNPQNFILTRLSEIFPEFRLLLTKADFVS
HHHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PNYQLIKLGFVWRMKILNKNIYVWTINDEKLMSKIIKKGIFALITDRPDLALKLFDSN
CCCEEEEEHHHHEEHHHCCEEEEEEECHHHHHHHHHHCCCEEEEECCCCEEEEEECCC
>Mature Secondary Structure 
TTKPLIIAHRGASGLVKFENTLASFAKAIELGVSMVEFDVRKTQDNLLVAFHDESIDGI
CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCHHHEEHHHEECCCCEEEEEECCCCCCE
KLRDLTYQQLLNISQKKGFDVPLVEDVLKLCQRKIKLDIELKEAGYELEIVNLVKKYLDY
EEECCCHHHHHCHHHHCCCCCCHHHHHHHHHHHHHEEEEEEECCCCEEHHHHHHHHHHCH
QDYVIKSFIDTAIITLKKTDNKITTGLLLGLGNPQNFILTRLSEIFPEFRLLLTKADFVS
HHHHHHHHHHHHEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PNYQLIKLGFVWRMKILNKNIYVWTINDEKLMSKIIKKGIFALITDRPDLALKLFDSN
CCCEEEEEHHHHEEHHHCCEEEEEEECHHHHHHHHHHCCCEEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]