| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474832
Identifier: 113474832
GI number: 113474832
Start: 1638481
End: 1638831
Strand: Reverse
Name: 113474832
Synonym: Tery_1048
Alternate gene names: NA
Gene position: 1638831-1638481 (Counterclockwise)
Preceding gene: 113474833
Following gene: 113474831
Centisome position: 21.15
GC content: 41.03
Gene sequence:
>351_bases ATGCAAGATAAGCAAAAAGTTACACTATATATTCAACCAGAACTGCATCGTAAGCTCAAAATAAGGGCTGCAGTTGACTC GGAACCAATGTCATCAATAGCAGAAAGGGCGATTCTTTTCTATCTAGAAAACCCAGAAGTAATTGATGACTCAAGTTCAA GATATGGACAGACCCACCGGGTATACAGTTGTCCAGAGTGTACAAGCTCACTTATAGTCCGAGAAGGAGAACTGGTATCC ATAAAAAATCAGCCAAACGTATTGGTAGACGAAAATATTCCCGTTAAGCAAGCCCCAGAAATAGAAAAGTCTGAGGTTCA ACCGGGAGAACAAGAGTTAGTTCCCTGCTAA
Upstream 100 bases:
>100_bases AATATTACAATAGTAGAGTTAAAGCGGTTTAATGGCTTGACATTCCCGAAAAGAGCCGTTAATGTAAAGAATATACCCGG GTAAACAAGTTGACTGTAAT
Downstream 100 bases:
>100_bases CACTAAGCTGTAGCAAAAATCTAGATATGATGACTAATTAAGAGAGATAATTTATAATAAGTCTCTTAGAATTCATAATC TGGTAGGGAAAAAAAGGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 116; Mature: 116
Protein sequence:
>116_residues MQDKQKVTLYIQPELHRKLKIRAAVDSEPMSSIAERAILFYLENPEVIDDSSSRYGQTHRVYSCPECTSSLIVREGELVS IKNQPNVLVDENIPVKQAPEIEKSEVQPGEQELVPC
Sequences:
>Translated_116_residues MQDKQKVTLYIQPELHRKLKIRAAVDSEPMSSIAERAILFYLENPEVIDDSSSRYGQTHRVYSCPECTSSLIVREGELVS IKNQPNVLVDENIPVKQAPEIEKSEVQPGEQELVPC >Mature_116_residues MQDKQKVTLYIQPELHRKLKIRAAVDSEPMSSIAERAILFYLENPEVIDDSSSRYGQTHRVYSCPECTSSLIVREGELVS IKNQPNVLVDENIPVKQAPEIEKSEVQPGEQELVPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13152; Mature: 13152
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDKQKVTLYIQPELHRKLKIRAAVDSEPMSSIAERAILFYLENPEVIDDSSSRYGQTHR CCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHCEEEEEEECCCCEECCCCCCCCCCCC VYSCPECTSSLIVREGELVSIKNQPNVLVDENIPVKQAPEIEKSEVQPGEQELVPC EEECCCHHHHHEECCCCEEEECCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCC >Mature Secondary Structure MQDKQKVTLYIQPELHRKLKIRAAVDSEPMSSIAERAILFYLENPEVIDDSSSRYGQTHR CCCCCEEEEEECCCCCCEEEEEEECCCCHHHHHHCEEEEEEECCCCEECCCCCCCCCCCC VYSCPECTSSLIVREGELVSIKNQPNVLVDENIPVKQAPEIEKSEVQPGEQELVPC EEECCCHHHHHEECCCCEEEECCCCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA