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The map label for this gene is yicO [C]

Identifier: 113474808

GI number: 113474808

Start: 1591706

End: 1593103

Strand: Reverse

Name: yicO [C]

Synonym: Tery_1020

Alternate gene names: 113474808

Gene position: 1593103-1591706 (Counterclockwise)

Preceding gene: 113474809

Following gene: 113474807

Centisome position: 20.56

GC content: 35.48

Gene sequence:

>1398_bases
ATGACTAAAGAAATAGATAAATCAAAGAAAGTTATTTCTACAAATGAATCAAACTCTGCATTAGACAAAAATCCTATAGC
TAGATTTTTTCGATTTAGACAACTTCAGACTAATTTTCGTACCGAAATTATAGCTGGAATTACTAGCTTTATGACAATGT
CATATATTTTAGTGGTCAATCCTAGCATTTTATCTAATGCCATTTTTCTAGAAAAGCCTGGAGATTTATTTGGAGAATTG
GTAATTGCTACAGCAATTTCGGCTGTGATAGCAACCTTGATTATGGGAGTTTATGCTAAATATCCTTTTGCTCTAGCTCC
TGGTATGGGACTAAATGCCTATTTTGCTTTTTCTGTAGTTTTGGAATTAGGGATTGATTGGCGAGTTGCCTTAGCTGCAA
TTTTGCTTGAGGGATTAATCTTTATTGGGTTAACTGTTACTAACGTTCGCAATAAAATTATTACTGCTATTCCCGACTGT
ATTAAACACGCTACCTCCGCAGGAATTGGTTTATTTATTGCCTATATTGCTCTTAAGAACGCAGGTTTAATTGCTCCATC
TGAGACAACCACAACCACTTTAGGAGATTTAACTCAACCAACAACTTTAGTGGCGATCACAGGAATTTTAATTGCTTTTG
CCCTTGTCGTTCGAGAGATCAAAGGTGCTTTATTCTGGGGCATTATTGCCACCTCATTATTAGGATGGATTTTTGGGTTA
ACTCCCCCACCTAAAGGTATTATGAGTATACCACAATTGCCCACAGATTTGTTTGGTCAAGCTTTTGTCGGTTTAACCCA
AATATGGCAGATTAATATTTGGGAAATCTTTCGTATTGTATTAGTTTTTCTTTTTGTAGATCTATTTGATACTGTAGGTA
CACTTACTGGACTAGGTACCAAGGCAAGATATATTAACAAGAAAGGGAAATTTCCTGGAGTAAATAGGGCTTTAATGGCA
GATGCTATTGGTACAACTGCTGGAGCAATTATGGGAACTTCCACTGTTACTACTTATATTGAATCCGCATCAGGGATTTC
TGAAGGAGGGCGTAGCGGATTTACTGCAGTAGTTACAGCACTTTTATTTGTTGTTGCTATCTTTTTTATTCCTCTATTAT
CTGCTATTCCTACTTTTGCTACTGCACCTGCTTTACTGATTGTTAGTATCTTAATGATGAGTGCTGTCAAGAATATTCTT
TGGGATGATCCTGGAGAGTCTATTCCCTCTTTTTTAACGATTATTATGATGCCCTTAAGTTATTCTATTGCTGAAGGATT
AGCTTTTGGTCTAATTACTTTCCCTTTACTAAAAACTTTTCAAGGTAAACCACAGGAAACTACAAGTGTTATGTGGATTT
TAGCTTTAGTATTTATCCTGAGATTTCTATTAAATTAA

Upstream 100 bases:

>100_bases
TGTTTACCTCCTCTTCAGCTTAAACAGAGCAACTCTTGTTAGTGTTACCCAAATTCAATTGTGACAGAGACCTTAAATTA
TTAGTAATTAGCTGATTAAA

Downstream 100 bases:

>100_bases
TCATTCTAAGTAATTGTAAAGAAAAGGCAAAATCTCCCCAATTATTGTAATAAACATGTTGTTCTATACACAATTTTTAG
AGATTTAATATAGCCTAAAC

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MTKEIDKSKKVISTNESNSALDKNPIARFFRFRQLQTNFRTEIIAGITSFMTMSYILVVNPSILSNAIFLEKPGDLFGEL
VIATAISAVIATLIMGVYAKYPFALAPGMGLNAYFAFSVVLELGIDWRVALAAILLEGLIFIGLTVTNVRNKIITAIPDC
IKHATSAGIGLFIAYIALKNAGLIAPSETTTTTLGDLTQPTTLVAITGILIAFALVVREIKGALFWGIIATSLLGWIFGL
TPPPKGIMSIPQLPTDLFGQAFVGLTQIWQINIWEIFRIVLVFLFVDLFDTVGTLTGLGTKARYINKKGKFPGVNRALMA
DAIGTTAGAIMGTSTVTTYIESASGISEGGRSGFTAVVTALLFVVAIFFIPLLSAIPTFATAPALLIVSILMMSAVKNIL
WDDPGESIPSFLTIIMMPLSYSIAEGLAFGLITFPLLKTFQGKPQETTSVMWILALVFILRFLLN

Sequences:

>Translated_465_residues
MTKEIDKSKKVISTNESNSALDKNPIARFFRFRQLQTNFRTEIIAGITSFMTMSYILVVNPSILSNAIFLEKPGDLFGEL
VIATAISAVIATLIMGVYAKYPFALAPGMGLNAYFAFSVVLELGIDWRVALAAILLEGLIFIGLTVTNVRNKIITAIPDC
IKHATSAGIGLFIAYIALKNAGLIAPSETTTTTLGDLTQPTTLVAITGILIAFALVVREIKGALFWGIIATSLLGWIFGL
TPPPKGIMSIPQLPTDLFGQAFVGLTQIWQINIWEIFRIVLVFLFVDLFDTVGTLTGLGTKARYINKKGKFPGVNRALMA
DAIGTTAGAIMGTSTVTTYIESASGISEGGRSGFTAVVTALLFVVAIFFIPLLSAIPTFATAPALLIVSILMMSAVKNIL
WDDPGESIPSFLTIIMMPLSYSIAEGLAFGLITFPLLKTFQGKPQETTSVMWILALVFILRFLLN
>Mature_464_residues
TKEIDKSKKVISTNESNSALDKNPIARFFRFRQLQTNFRTEIIAGITSFMTMSYILVVNPSILSNAIFLEKPGDLFGELV
IATAISAVIATLIMGVYAKYPFALAPGMGLNAYFAFSVVLELGIDWRVALAAILLEGLIFIGLTVTNVRNKIITAIPDCI
KHATSAGIGLFIAYIALKNAGLIAPSETTTTTLGDLTQPTTLVAITGILIAFALVVREIKGALFWGIIATSLLGWIFGLT
PPPKGIMSIPQLPTDLFGQAFVGLTQIWQINIWEIFRIVLVFLFVDLFDTVGTLTGLGTKARYINKKGKFPGVNRALMAD
AIGTTAGAIMGTSTVTTYIESASGISEGGRSGFTAVVTALLFVVAIFFIPLLSAIPTFATAPALLIVSILMMSAVKNILW
DDPGESIPSFLTIIMMPLSYSIAEGLAFGLITFPLLKTFQGKPQETTSVMWILALVFILRFLLN

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082309, Length=453, Percent_Identity=38.8520971302428, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1790150, Length=456, Percent_Identity=38.8157894736842, Blast_Score=298, Evalue=5e-82,
Organism=Escherichia coli, GI1790499, Length=427, Percent_Identity=29.7423887587822, Blast_Score=193, Evalue=2e-50,
Organism=Escherichia coli, GI48994909, Length=426, Percent_Identity=30.5164319248826, Blast_Score=179, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 50085; Mature: 49954

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKEIDKSKKVISTNESNSALDKNPIARFFRFRQLQTNFRTEIIAGITSFMTMSYILVVN
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
PSILSNAIFLEKPGDLFGELVIATAISAVIATLIMGVYAKYPFALAPGMGLNAYFAFSVV
HHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHH
LELGIDWRVALAAILLEGLIFIGLTVTNVRNKIITAIPDCIKHATSAGIGLFIAYIALKN
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHC
AGLIAPSETTTTTLGDLTQPTTLVAITGILIAFALVVREIKGALFWGIIATSLLGWIFGL
CCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TPPPKGIMSIPQLPTDLFGQAFVGLTQIWQINIWEIFRIVLVFLFVDLFDTVGTLTGLGT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KARYINKKGKFPGVNRALMADAIGTTAGAIMGTSTVTTYIESASGISEGGRSGFTAVVTA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LLFVVAIFFIPLLSAIPTFATAPALLIVSILMMSAVKNILWDDPGESIPSFLTIIMMPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
YSIAEGLAFGLITFPLLKTFQGKPQETTSVMWILALVFILRFLLN
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKEIDKSKKVISTNESNSALDKNPIARFFRFRQLQTNFRTEIIAGITSFMTMSYILVVN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC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HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]