| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474792
Identifier: 113474792
GI number: 113474792
Start: 1566751
End: 1567509
Strand: Reverse
Name: 113474792
Synonym: Tery_1002
Alternate gene names: NA
Gene position: 1567509-1566751 (Counterclockwise)
Preceding gene: 113474799
Following gene: 113474790
Centisome position: 20.23
GC content: 33.07
Gene sequence:
>759_bases ATGTATAAAACCAAAATTCTAACCATGCATGAAAATTTGGCAGGACATGAAACTTTAGAAATAGACAAAAAATTGATTAA TGATTGTTACCTAAATAAAATAAAAATAAACACATTAGAAAATAATAAAACAACCTGGTTTAAGGTAAAATACAGTGACT ATATGCAACTATATGTAGATGTTGAAACTGTAGCAAAGCACTTTAACTCTCACAAGAATTGGTTTTATAGATGCGCTTAT CCAATGAAAGTTGAGCCCCTCGGAGAAAATGGCTATGATTTATTAGTTGGAAAATTTGGTTCTTTTGGATACCAGATAGA AGCGAGAGTTGGCTTGGAGCTAGTACCATCAGATTCCCCAAGAAAATATAGAATCAGAAATATTAAATTGCCAAATTATA CAGCTCCTGGATATGAAATTAAATTTCAATCAGAAATGGAGTTGGTAGAGTTACCTACAGATCAATTTCATAATCAGAAG GAGATTCAAAAATGGGGACTCCCCAATGTTATGACTGGAGTAGAATGGGATTTAGATTTGACCGTGGGGGTTAAGTTTCC TGAGTTTATTCAGAAAATGTCTCCTACTTTAATTGAGAATACTGGCAATAACTTATTAGTAAAAATAGTGCGCCAGGTAT CACGGTATTTAAGCTACAAAACTCAAATAGATTTTCATAAGACCTATAATTTGCCATTTCCCAAGCAAAGAAAAAGAAAG GAGGGGCTTGGTTTCCCAACCCCTAAAATATCTAAATAA
Upstream 100 bases:
>100_bases TATAATATATTAAATAAATATTAATTATAATTCCATGATTCATACTTTATAAAGATAAATTAATGCTCTTTGGCAATCCT AAAATTATTAAGTATAGTTT
Downstream 100 bases:
>100_bases ATATTTATAGTAGTGCAAGATTTAACCGAATCTAAAGTCAACACGCAAGTCATAAACCTTGAATGTGTATGGGATCAACA GTTAAAGTAATAACTTTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MYKTKILTMHENLAGHETLEIDKKLINDCYLNKIKINTLENNKTTWFKVKYSDYMQLYVDVETVAKHFNSHKNWFYRCAY PMKVEPLGENGYDLLVGKFGSFGYQIEARVGLELVPSDSPRKYRIRNIKLPNYTAPGYEIKFQSEMELVELPTDQFHNQK EIQKWGLPNVMTGVEWDLDLTVGVKFPEFIQKMSPTLIENTGNNLLVKIVRQVSRYLSYKTQIDFHKTYNLPFPKQRKRK EGLGFPTPKISK
Sequences:
>Translated_252_residues MYKTKILTMHENLAGHETLEIDKKLINDCYLNKIKINTLENNKTTWFKVKYSDYMQLYVDVETVAKHFNSHKNWFYRCAY PMKVEPLGENGYDLLVGKFGSFGYQIEARVGLELVPSDSPRKYRIRNIKLPNYTAPGYEIKFQSEMELVELPTDQFHNQK EIQKWGLPNVMTGVEWDLDLTVGVKFPEFIQKMSPTLIENTGNNLLVKIVRQVSRYLSYKTQIDFHKTYNLPFPKQRKRK EGLGFPTPKISK >Mature_252_residues MYKTKILTMHENLAGHETLEIDKKLINDCYLNKIKINTLENNKTTWFKVKYSDYMQLYVDVETVAKHFNSHKNWFYRCAY PMKVEPLGENGYDLLVGKFGSFGYQIEARVGLELVPSDSPRKYRIRNIKLPNYTAPGYEIKFQSEMELVELPTDQFHNQK EIQKWGLPNVMTGVEWDLDLTVGVKFPEFIQKMSPTLIENTGNNLLVKIVRQVSRYLSYKTQIDFHKTYNLPFPKQRKRK EGLGFPTPKISK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29617; Mature: 29617
Theoretical pI: Translated: 9.69; Mature: 9.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKTKILTMHENLAGHETLEIDKKLINDCYLNKIKINTLENNKTTWFKVKYSDYMQLYVD CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEECCEEEEEEE VETVAKHFNSHKNWFYRCAYPMKVEPLGENGYDLLVGKFGSFGYQIEARVGLELVPSDSP HHHHHHHHCCCCCEEEEECCCEEEEECCCCCCEEEEECCCCCCEEEEEEECEEECCCCCC RKYRIRNIKLPNYTAPGYEIKFQSEMELVELPTDQFHNQKEIQKWGLPNVMTGVEWDLDL CEEEEEEEECCCCCCCCEEEEECCCCEEEECCCHHHCCHHHHHHCCCCCHHCCCEEEEEE TVGVKFPEFIQKMSPTLIENTGNNLLVKIVRQVSRYLSYKTQIDFHKTYNLPFPKQRKRK EEECCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHH EGLGFPTPKISK CCCCCCCCCCCC >Mature Secondary Structure MYKTKILTMHENLAGHETLEIDKKLINDCYLNKIKINTLENNKTTWFKVKYSDYMQLYVD CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEEECCEEEEEEE VETVAKHFNSHKNWFYRCAYPMKVEPLGENGYDLLVGKFGSFGYQIEARVGLELVPSDSP HHHHHHHHCCCCCEEEEECCCEEEEECCCCCCEEEEECCCCCCEEEEEEECEEECCCCCC RKYRIRNIKLPNYTAPGYEIKFQSEMELVELPTDQFHNQKEIQKWGLPNVMTGVEWDLDL CEEEEEEEECCCCCCCCEEEEECCCCEEEECCCHHHCCHHHHHHCCCCCHHCCCEEEEEE TVGVKFPEFIQKMSPTLIENTGNNLLVKIVRQVSRYLSYKTQIDFHKTYNLPFPKQRKRK EEECCCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHH EGLGFPTPKISK CCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA