Click here to switch to the map view.

The map label for this gene is radA [H]

Identifier: 113474757

GI number: 113474757

Start: 1505693

End: 1507246

Strand: Direct

Name: radA [H]

Synonym: Tery_0956

Alternate gene names: 113474757

Gene position: 1505693-1507246 (Clockwise)

Preceding gene: 113474754

Following gene: 113474759

Centisome position: 19.43

GC content: 39.96

Gene sequence:

>1554_bases
ATGCCAAAACACAAAACAAAGTATGTTTGTAGAGAATGTGGGTATGAGTCTACCCAATTTCTGGGCAGATGTCCTGGATG
TAATACTTGGAACTCTCTAAAAGAGGAGATAGAACAAACAACTGTAACTGCTTTACAAAGGCTGGGAATAACTGATATTG
GTATTGGTTCTCAAGCATCTGAGGGAGATGATTCTTCTGGTCAACCAAGAGCATCTTTTTTACTATCTCAGATTTCTGAC
CAAACGTTGTCTAGAATGCCTTCTGGGTTTGAAGAGTTAGACCGAGTGCTTGGTGGTGGAATTGTTCCTGGTTCCTTGGT
GTTAATTGGTGGAGAACCTGGTATTGGTAAGTCTACTCTTTTATTACAAGTAGCTAATCAGTTGTCTAATAGATGTCGGG
TTTTGTATGTTTCCGCGGAAGAGTCTGGACAGCAGGTGAAGTTACGTTCCCAACGTTTAATTGTTAACTTTAATGAAGCA
AAAGTAGAGCATAAGGATAATGTTTCAAATGTTGAGATCGATCAGGATTTATCTAATGATGAAAATCAAGAAAATTATGG
CAATTCTGAACCTATAAATGATTCTACTACAGATTCAATGGAAAATTTATTTTTATTGCCAGAAACAGATTTAGAAGTAA
TTTTAAGAGAGTTGGAATCTCTAAAACCATATCTAGCAGTAATTGACAGTATTCAAACTATCTATTTTGCTTCTTTGACT
TCCGCTCCTGGTTCGGTTGCTCAAGTCCGGGAATGTACTTCAGCATTAATGCAAGTGGCAAAGCGGGAAAATATTACTTT
ATTAATAGTTGGTCATGTAACTAAAGATGGTGCTTTAGCAGGTCCTCGTGTTTTAGAACACTTGGTAGATACGGTTCTAT
ATTTTGAGGGCGATCGCTTTGCCTCCCACCGTTTGTTGCGCTCTATGAAAAATCGTTTTGGTGCTACTCACGAAATTGGA
GTATTTGAAATGGTGGCTAATGGTTTAAAAGAAATATTAAACCCATCAGAATTATTCCTCGGAAGTAGGGATGAGTATTC
TTCTGGAACTTCTACAGTTGTTTCAATGGAAGGTACTCGCCCCATAGTTGTAGAAATTCAAGCTTTAGTAAGTCCGGCAA
GTCATGGTTCCCCTCGACGTTCTACTACTGGAATTGATGGTAGTAGATTACAACAAATTTTGGCAGTTTTGGAAAAACGG
GTAGGCATTCCTTTATCAAAGTTAGATACTTATGTGGCGACTGTGGGAGGTTTGAGTGTGGAAGAACCTGCTGCAGACTT
GGGGATAGCTATTGCTGTGGTGGCTAGTTTTCGCGATCGCGTAGTTGACCCCCGAACTGTTTTACTGGGAGAGGTCGGTT
TGGGTGGACAAGTGAGACCTGTATCTCAGTTGGAGTTGAGATTAAGGGAAGCTGCTAAGTTAGGTTTTAAAAGGGCAATT
ATTCCCAAAGGTCAGCAACCCATGGATTTAGGAATGCGTATTTTGCCTATTGCTAAGGTCATAGATGCAATTATTGCTGC
TATTCCGGCCCAACCTCCTACCATGGAGAATTGA

Upstream 100 bases:

>100_bases
AGAAAAGCTGCAAACCATGTTATGTGAGCTTTTTAGTCTTACCTGTCACCTCTCCAGGGATTTTTTATATTTGGTGGTGA
ACATTAACTTATTTTAAGAA

Downstream 100 bases:

>100_bases
TATTTTTTTGTTAACAGGAATAAGGAAGAAACAGACTATGTTTTTTATAATCAGCACCCCAAATGTAGGGATTTGTAGTT
TTTTTGTATTCTTTTGGAAT

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 517; Mature: 516

Protein sequence:

>517_residues
MPKHKTKYVCRECGYESTQFLGRCPGCNTWNSLKEEIEQTTVTALQRLGITDIGIGSQASEGDDSSGQPRASFLLSQISD
QTLSRMPSGFEELDRVLGGGIVPGSLVLIGGEPGIGKSTLLLQVANQLSNRCRVLYVSAEESGQQVKLRSQRLIVNFNEA
KVEHKDNVSNVEIDQDLSNDENQENYGNSEPINDSTTDSMENLFLLPETDLEVILRELESLKPYLAVIDSIQTIYFASLT
SAPGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRFASHRLLRSMKNRFGATHEIG
VFEMVANGLKEILNPSELFLGSRDEYSSGTSTVVSMEGTRPIVVEIQALVSPASHGSPRRSTTGIDGSRLQQILAVLEKR
VGIPLSKLDTYVATVGGLSVEEPAADLGIAIAVVASFRDRVVDPRTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAI
IPKGQQPMDLGMRILPIAKVIDAIIAAIPAQPPTMEN

Sequences:

>Translated_517_residues
MPKHKTKYVCRECGYESTQFLGRCPGCNTWNSLKEEIEQTTVTALQRLGITDIGIGSQASEGDDSSGQPRASFLLSQISD
QTLSRMPSGFEELDRVLGGGIVPGSLVLIGGEPGIGKSTLLLQVANQLSNRCRVLYVSAEESGQQVKLRSQRLIVNFNEA
KVEHKDNVSNVEIDQDLSNDENQENYGNSEPINDSTTDSMENLFLLPETDLEVILRELESLKPYLAVIDSIQTIYFASLT
SAPGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRFASHRLLRSMKNRFGATHEIG
VFEMVANGLKEILNPSELFLGSRDEYSSGTSTVVSMEGTRPIVVEIQALVSPASHGSPRRSTTGIDGSRLQQILAVLEKR
VGIPLSKLDTYVATVGGLSVEEPAADLGIAIAVVASFRDRVVDPRTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAI
IPKGQQPMDLGMRILPIAKVIDAIIAAIPAQPPTMEN
>Mature_516_residues
PKHKTKYVCRECGYESTQFLGRCPGCNTWNSLKEEIEQTTVTALQRLGITDIGIGSQASEGDDSSGQPRASFLLSQISDQ
TLSRMPSGFEELDRVLGGGIVPGSLVLIGGEPGIGKSTLLLQVANQLSNRCRVLYVSAEESGQQVKLRSQRLIVNFNEAK
VEHKDNVSNVEIDQDLSNDENQENYGNSEPINDSTTDSMENLFLLPETDLEVILRELESLKPYLAVIDSIQTIYFASLTS
APGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRFASHRLLRSMKNRFGATHEIGV
FEMVANGLKEILNPSELFLGSRDEYSSGTSTVVSMEGTRPIVVEIQALVSPASHGSPRRSTTGIDGSRLQQILAVLEKRV
GIPLSKLDTYVATVGGLSVEEPAADLGIAIAVVASFRDRVVDPRTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAII
PKGQQPMDLGMRILPIAKVIDAIIAAIPAQPPTMEN

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=502, Percent_Identity=41.8326693227092, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 56086; Mature: 55955

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKHKTKYVCRECGYESTQFLGRCPGCNTWNSLKEEIEQTTVTALQRLGITDIGIGSQAS
CCCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EGDDSSGQPRASFLLSQISDQTLSRMPSGFEELDRVLGGGIVPGSLVLIGGEPGIGKSTL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
LLQVANQLSNRCRVLYVSAEESGQQVKLRSQRLIVNFNEAKVEHKDNVSNVEIDQDLSND
HHHHHHHHCCCEEEEEEECCCCCCEEEEECCEEEEEEHHHHCCCCCCCCCEEECCCCCCC
ENQENYGNSEPINDSTTDSMENLFLLPETDLEVILRELESLKPYLAVIDSIQTIYFASLT
CCCCCCCCCCCCCCCCCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SAPGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRF
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHH
ASHRLLRSMKNRFGATHEIGVFEMVANGLKEILNPSELFLGSRDEYSSGTSTVVSMEGTR
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEECCCC
PIVVEIQALVSPASHGSPRRSTTGIDGSRLQQILAVLEKRVGIPLSKLDTYVATVGGLSV
CEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
EEPAADLGIAIAVVASFRDRVVDPRTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAI
CCCHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHEEC
IPKGQQPMDLGMRILPIAKVIDAIIAAIPAQPPTMEN
CCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PKHKTKYVCRECGYESTQFLGRCPGCNTWNSLKEEIEQTTVTALQRLGITDIGIGSQAS
CCCHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
EGDDSSGQPRASFLLSQISDQTLSRMPSGFEELDRVLGGGIVPGSLVLIGGEPGIGKSTL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHH
LLQVANQLSNRCRVLYVSAEESGQQVKLRSQRLIVNFNEAKVEHKDNVSNVEIDQDLSND
HHHHHHHHCCCEEEEEEECCCCCCEEEEECCEEEEEEHHHHCCCCCCCCCEEECCCCCCC
ENQENYGNSEPINDSTTDSMENLFLLPETDLEVILRELESLKPYLAVIDSIQTIYFASLT
CCCCCCCCCCCCCCCCCHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SAPGSVAQVRECTSALMQVAKRENITLLIVGHVTKDGALAGPRVLEHLVDTVLYFEGDRF
CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHH
ASHRLLRSMKNRFGATHEIGVFEMVANGLKEILNPSELFLGSRDEYSSGTSTVVSMEGTR
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCEEEEECCCC
PIVVEIQALVSPASHGSPRRSTTGIDGSRLQQILAVLEKRVGIPLSKLDTYVATVGGLSV
CEEEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
EEPAADLGIAIAVVASFRDRVVDPRTVLLGEVGLGGQVRPVSQLELRLREAAKLGFKRAI
CCCHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCCHHHHHHHHHHHHHHCHHEEC
IPKGQQPMDLGMRILPIAKVIDAIIAAIPAQPPTMEN
CCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]