| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474747
Identifier: 113474747
GI number: 113474747
Start: 1482519
End: 1483148
Strand: Direct
Name: 113474747
Synonym: Tery_0942
Alternate gene names: NA
Gene position: 1482519-1483148 (Clockwise)
Preceding gene: 113474746
Following gene: 113474748
Centisome position: 19.13
GC content: 35.56
Gene sequence:
>630_bases ATGCAGAGTTATTTTGGTTATGAAGAAGTAATTGTTCAAGACATTTTACTCAAAACAGATAACGTATTGTTTTCTAAGGA AAAATGCTATTCTCTGCCATTAGCTCAAGTTTCAAACACACTTCTAACAAAAGGTTACGAAGGAGAATTTGGTTTAGGAA TCAAAGCATTGATCATGAGCCTATACTATGATGGAAACATGAGCGAAGGTAAACTTCTAGAATTTTTATCAGATATTGGT ATCTCAATGTTAGCAGGATACCTTTTATTGATCAGACATGAATCATCTTTTGTAGTTGAATTGAAACAAGTATATAGGGA GTTGTTTCTGGTTGTCGAGTATCTAGAATTACCTTGGTATAATAATCCTGCGGAGTTAGCAGCTAGAACAATGGTGCTGC GACGATCGATTAGTTATGCTACTCAGACATTTATTTGTACAAAGGCTTGGGATATTTTTATGTCCCTTGTTGACACTACT CGTAAGTTGGATATTAGCTTTTTTGAGCATATAAGCGATCACATTTCTCAGGCTGGAATTATTCTTCCTCTGGCAACTAT GATTTGTGATCAAGCTTCTCTTCATTTCTGGGGTTGGTCATGGTCAATGGAATCTTTGCCTACTAACTAA
Upstream 100 bases:
>100_bases ACTTTTTCAGTATGAAATTTTGCCGCAACCTACTTAGGATTGCTATATTAGTCTATTATCAGGAGGATATACCACCAAAT TCAGGAGGATATACCACCAA
Downstream 100 bases:
>100_bases TTATTGAGGGAATAATAATCATATTTATGGTAATACAATAAAATAAATAGTGAGTAAGCCAATGAAACTTCGCAAAAAAA CACGAATAATTATTAATACG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MQSYFGYEEVIVQDILLKTDNVLFSKEKCYSLPLAQVSNTLLTKGYEGEFGLGIKALIMSLYYDGNMSEGKLLEFLSDIG ISMLAGYLLLIRHESSFVVELKQVYRELFLVVEYLELPWYNNPAELAARTMVLRRSISYATQTFICTKAWDIFMSLVDTT RKLDISFFEHISDHISQAGIILPLATMICDQASLHFWGWSWSMESLPTN
Sequences:
>Translated_209_residues MQSYFGYEEVIVQDILLKTDNVLFSKEKCYSLPLAQVSNTLLTKGYEGEFGLGIKALIMSLYYDGNMSEGKLLEFLSDIG ISMLAGYLLLIRHESSFVVELKQVYRELFLVVEYLELPWYNNPAELAARTMVLRRSISYATQTFICTKAWDIFMSLVDTT RKLDISFFEHISDHISQAGIILPLATMICDQASLHFWGWSWSMESLPTN >Mature_209_residues MQSYFGYEEVIVQDILLKTDNVLFSKEKCYSLPLAQVSNTLLTKGYEGEFGLGIKALIMSLYYDGNMSEGKLLEFLSDIG ISMLAGYLLLIRHESSFVVELKQVYRELFLVVEYLELPWYNNPAELAARTMVLRRSISYATQTFICTKAWDIFMSLVDTT RKLDISFFEHISDHISQAGIILPLATMICDQASLHFWGWSWSMESLPTN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23960; Mature: 23960
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSYFGYEEVIVQDILLKTDNVLFSKEKCYSLPLAQVSNTLLTKGYEGEFGLGIKALIMS CCCCCCHHHHHHHHHHHHCCCCEECHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH LYYDGNMSEGKLLEFLSDIGISMLAGYLLLIRHESSFVVELKQVYRELFLVVEYLELPWY HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC NNPAELAARTMVLRRSISYATQTFICTKAWDIFMSLVDTTRKLDISFFEHISDHISQAGI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ILPLATMICDQASLHFWGWSWSMESLPTN HHHHHHHHHCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure MQSYFGYEEVIVQDILLKTDNVLFSKEKCYSLPLAQVSNTLLTKGYEGEFGLGIKALIMS CCCCCCHHHHHHHHHHHHCCCCEECHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH LYYDGNMSEGKLLEFLSDIGISMLAGYLLLIRHESSFVVELKQVYRELFLVVEYLELPWY HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCC NNPAELAARTMVLRRSISYATQTFICTKAWDIFMSLVDTTRKLDISFFEHISDHISQAGI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ILPLATMICDQASLHFWGWSWSMESLPTN HHHHHHHHHCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA