Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113474732

Identifier: 113474732

GI number: 113474732

Start: 1456763

End: 1457209

Strand: Direct

Name: 113474732

Synonym: Tery_0922

Alternate gene names: NA

Gene position: 1456763-1457209 (Clockwise)

Preceding gene: 113474730

Following gene: 113474734

Centisome position: 18.8

GC content: 35.79

Gene sequence:

>447_bases
GTGGCTACCGTAAAACGTTCTGATAGATTACCAATGCTTCGTAAAGCTTATTTGCAGGTTTGTTCAGACCTGAAAGAAAA
TGAGAAAGTTTTGTCATGGTTTGAGCAATTGTATCAAGTAACAATTCCACAAACAATTTGGTTACAGTGTGAATTGACTT
TAGCTGAAGGTTTCACTAATGCAACTCGCCATGCTCATAAGTATTTGCCTAGAGAGACACCTATAGATATTGAAATTACA
ATGTATACCAACTACCTCCAAATTAGAATTTGGGATTATGGTCAGCCTTTTGATTTGATAGAATGGTTAAAGGCACAACC
CGATCCAGATATATTTGCTTCCGGTGGACGAGGTATAAGATTAATGTATGCCATAGCAGATCATATTAGTTATACTCGTA
CATCTGATAATCGTAACTGTTTGTTAATAAGCAAAGATTATTGGTGA

Upstream 100 bases:

>100_bases
CTGGAATTTATAATGTTAATTATTTACATAAATTCTATATAGATCAATTATAATATAGAAAATATACCTGATACATTATG
TAATTATTGAATATAGAAGT

Downstream 100 bases:

>100_bases
TATCCCCAAGTTTAAATGGCAATTCTGATTTTGAGAGAATCTGAGCTTTATTAGTTACTCTAAGAAATATTTAGGCTAGA
TACTCATAAATTAAGTATAG

Product: putative anti-sigma regulatory factor, serine/threonine protein kinase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MATVKRSDRLPMLRKAYLQVCSDLKENEKVLSWFEQLYQVTIPQTIWLQCELTLAEGFTNATRHAHKYLPRETPIDIEIT
MYTNYLQIRIWDYGQPFDLIEWLKAQPDPDIFASGGRGIRLMYAIADHISYTRTSDNRNCLLISKDYW

Sequences:

>Translated_148_residues
MATVKRSDRLPMLRKAYLQVCSDLKENEKVLSWFEQLYQVTIPQTIWLQCELTLAEGFTNATRHAHKYLPRETPIDIEIT
MYTNYLQIRIWDYGQPFDLIEWLKAQPDPDIFASGGRGIRLMYAIADHISYTRTSDNRNCLLISKDYW
>Mature_147_residues
ATVKRSDRLPMLRKAYLQVCSDLKENEKVLSWFEQLYQVTIPQTIWLQCELTLAEGFTNATRHAHKYLPRETPIDIEITM
YTNYLQIRIWDYGQPFDLIEWLKAQPDPDIFASGGRGIRLMYAIADHISYTRTSDNRNCLLISKDYW

Specific function: Unknown

COG id: COG2172

COG function: function code T; Anti-sigma regulatory factor (Ser/Thr protein kinase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17495; Mature: 17364

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVKRSDRLPMLRKAYLQVCSDLKENEKVLSWFEQLYQVTIPQTIWLQCELTLAEGFTN
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCCH
ATRHAHKYLPRETPIDIEITMYTNYLQIRIWDYGQPFDLIEWLKAQPDPDIFASGGRGIR
HHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCEE
LMYAIADHISYTRTSDNRNCLLISKDYW
EEEEEHHHHHEEECCCCCCEEEEECCCC
>Mature Secondary Structure 
ATVKRSDRLPMLRKAYLQVCSDLKENEKVLSWFEQLYQVTIPQTIWLQCELTLAEGFTN
CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEHHCCCCH
ATRHAHKYLPRETPIDIEITMYTNYLQIRIWDYGQPFDLIEWLKAQPDPDIFASGGRGIR
HHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHHHHHHCCCCCCEEECCCCCEE
LMYAIADHISYTRTSDNRNCLLISKDYW
EEEEEHHHHHEEECCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA