| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474613
Identifier: 113474613
GI number: 113474613
Start: 1241466
End: 1242032
Strand: Direct
Name: 113474613
Synonym: Tery_0777
Alternate gene names: NA
Gene position: 1241466-1242032 (Clockwise)
Preceding gene: 113474611
Following gene: 113474614
Centisome position: 16.02
GC content: 30.51
Gene sequence:
>567_bases ATGAAAACTACTACTACTGCTCTTAAAGAATGGAATGTTACTGTTAACGCTTTGGAAAATGGCAGTACAATTATGTTACT AAGAAAAGGTGGAATTAGAGAACAGAAAGGTAATTTTACTATTGCACATCAACAGGTTTTACTCTACCCTACTTTTGAAC ATCAAAAGCCAGATTTACTCAAACCAAAATATGCCAGCCAAGTACAAATCGTAGATTCTGGTTGGCATCCTAAAAAAATT AAAATTAGTAGTTTTGCTGAGATTACTAATGTTTTACCCGTAAGTGATAAGTCAATTTTAAATAAGTTATTTTTATCTCA TATTTGGAATGAAAAATTTATCAGCAATCGCCTAAAATATAAACCACAAAAAATGCTTTATATTTTACTTTTGAGAACTT ATAAACTTTCTCAAGCCTATGAATTTTTTTACCGCCCAGAATATGGAGGCTGTCGTTCTTGGATTAACTTAGCTACACCA ATCAATATCACAAACTTAACTCCTGTTTTAAATGATTATACTTATCAGAAACTATCCCGAGAAATTTCTCAACTTTTTAC AGATTAA
Upstream 100 bases:
>100_bases ATTTATAGGGAGATGAGGAGATAGGAAAGTTAGAGTATTAACACAATTTTTTTGTATCTCATATATTTATCAAGTTTTGT TTATATGCTAGAGAATAATT
Downstream 100 bases:
>100_bases ACAATCAGGATTAGTTTAAATAGTTGATATTCATTAACCCTATTAACGGGAATTTAGCCAATTTCAATTCTCAACAAACC TCAAACTATTTTTATAAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 188; Mature: 188
Protein sequence:
>188_residues MKTTTTALKEWNVTVNALENGSTIMLLRKGGIREQKGNFTIAHQQVLLYPTFEHQKPDLLKPKYASQVQIVDSGWHPKKI KISSFAEITNVLPVSDKSILNKLFLSHIWNEKFISNRLKYKPQKMLYILLLRTYKLSQAYEFFYRPEYGGCRSWINLATP INITNLTPVLNDYTYQKLSREISQLFTD
Sequences:
>Translated_188_residues MKTTTTALKEWNVTVNALENGSTIMLLRKGGIREQKGNFTIAHQQVLLYPTFEHQKPDLLKPKYASQVQIVDSGWHPKKI KISSFAEITNVLPVSDKSILNKLFLSHIWNEKFISNRLKYKPQKMLYILLLRTYKLSQAYEFFYRPEYGGCRSWINLATP INITNLTPVLNDYTYQKLSREISQLFTD >Mature_188_residues MKTTTTALKEWNVTVNALENGSTIMLLRKGGIREQKGNFTIAHQQVLLYPTFEHQKPDLLKPKYASQVQIVDSGWHPKKI KISSFAEITNVLPVSDKSILNKLFLSHIWNEKFISNRLKYKPQKMLYILLLRTYKLSQAYEFFYRPEYGGCRSWINLATP INITNLTPVLNDYTYQKLSREISQLFTD
Specific function: Unknown
COG id: COG4293
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21919; Mature: 21919
Theoretical pI: Translated: 10.19; Mature: 10.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTTTTALKEWNVTVNALENGSTIMLLRKGGIREQKGNFTIAHQQVLLYPTFEHQKPDLL CCCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC KPKYASQVQIVDSGWHPKKIKISSFAEITNVLPVSDKSILNKLFLSHIWNEKFISNRLKY CCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC KPQKMLYILLLRTYKLSQAYEFFYRPEYGGCRSWINLATPINITNLTPVLNDYTYQKLSR CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHH EISQLFTD HHHHHHCC >Mature Secondary Structure MKTTTTALKEWNVTVNALENGSTIMLLRKGGIREQKGNFTIAHQQVLLYPTFEHQKPDLL CCCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCC KPKYASQVQIVDSGWHPKKIKISSFAEITNVLPVSDKSILNKLFLSHIWNEKFISNRLKY CCCCCCEEEEEECCCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHCC KPQKMLYILLLRTYKLSQAYEFFYRPEYGGCRSWINLATPINITNLTPVLNDYTYQKLSR CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHHHH EISQLFTD HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA