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The map label for this gene is nusB

Identifier: 113474580

GI number: 113474580

Start: 1190971

End: 1191594

Strand: Direct

Name: nusB

Synonym: Tery_0737

Alternate gene names: 113474580

Gene position: 1190971-1191594 (Clockwise)

Preceding gene: 113474579

Following gene: 113474581

Centisome position: 15.37

GC content: 36.54

Gene sequence:

>624_bases
ATGAAAAAGACTCCCCGTTCTACAGCTCGCGAATTAGCTCTTCTTGCCTTAAGTCAATTACCAAAAAAATCAGGGAGTTT
AGAAAAAAAGCAACTTCAAGAAGTTGTATTGGCAGCAGTTCGGACTTTAAGAATAGAGGCCCAAGATATTTTAGAAACTG
CAGCAGCAGAACTACAGAGAGGGAGCGATCGCCTTCTGAATAGTCAGATAGACACTACTGATATTGAAAGTGCTAGAGTA
ATGCTTTATGAAGCCATAGAGTTAGGCCAAACAGCAATTAATCGTATTGGAACTGCTGTTGAATTACCAGAAATGCTTCA
ACTTACTAATCAATTAGAAGTTCGCAGCTATGCTATGGAAGTTCTAACAAAAGTAAATGGTAATAGAAAAGAAGTTGATA
AATTACTCCAAGAATCAATAGTGGATTGGCAGATAGAACGTTTACCCAGAATTGACCTAGATATACTTAGAATTGCAGTA
GCAGAAATGATGTTTATTGGAATTCAAAAACAAGTGGCAATTAGTGAAGCAGTAGAGCTAGCCAAGCGTTATAGTGGTGA
AGATGGGTATAAGTTTATCAATGGAGTGTTGCGAAGAGTTTTTGATAAAATTAATGTAATTTGA

Upstream 100 bases:

>100_bases
CAATAAGCTCAAACCAGCACCTCTAGATTAAAGAATTAAGATCAACAACTTTTTGCTGAAAAGGATTTAACAGATTAGAC
CAGAATATAATACAAAGACT

Downstream 100 bases:

>100_bases
GGGGTCAAAGTCAAACTTAAAAGTTAAAAGTTAGATTTGATTGGAGCAGGAATTAGGGAAAAACACTAGCAGTTCCCAGA
AACTGTAGTGCCAGGGTATA

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKKTPRSTARELALLALSQLPKKSGSLEKKQLQEVVLAAVRTLRIEAQDILETAAAELQRGSDRLLNSQIDTTDIESARV
MLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAV
AEMMFIGIQKQVAISEAVELAKRYSGEDGYKFINGVLRRVFDKINVI

Sequences:

>Translated_207_residues
MKKTPRSTARELALLALSQLPKKSGSLEKKQLQEVVLAAVRTLRIEAQDILETAAAELQRGSDRLLNSQIDTTDIESARV
MLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAV
AEMMFIGIQKQVAISEAVELAKRYSGEDGYKFINGVLRRVFDKINVI
>Mature_207_residues
MKKTPRSTARELALLALSQLPKKSGSLEKKQLQEVVLAAVRTLRIEAQDILETAAAELQRGSDRLLNSQIDTTDIESARV
MLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAMEVLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAV
AEMMFIGIQKQVAISEAVELAKRYSGEDGYKFINGVLRRVFDKINVI

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_TRIEI (Q118A6)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_720641.1
- ProteinModelPortal:   Q118A6
- SMR:   Q118A6
- STRING:   Q118A6
- GeneID:   4243185
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_0737
- NMPDR:   fig|203124.1.peg.696
- eggNOG:   COG0781
- HOGENOM:   HBG635304
- OMA:   GHRFING
- ProtClustDB:   PRK09634
- BioCyc:   TERY203124:TERY_0737-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 23349; Mature: 23349

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPRSTARELALLALSQLPKKSGSLEKKQLQEVVLAAVRTLRIEAQDILETAAAELQR
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSDRLLNSQIDTTDIESARVMLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAME
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH
VLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAVAEMMFIGIQKQVAISEAVEL
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKRYSGEDGYKFINGVLRRVFDKINVI
HHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKTPRSTARELALLALSQLPKKSGSLEKKQLQEVVLAAVRTLRIEAQDILETAAAELQR
CCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GSDRLLNSQIDTTDIESARVMLYEAIELGQTAINRIGTAVELPEMLQLTNQLEVRSYAME
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHH
VLTKVNGNRKEVDKLLQESIVDWQIERLPRIDLDILRIAVAEMMFIGIQKQVAISEAVEL
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKRYSGEDGYKFINGVLRRVFDKINVI
HHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA