Click here to switch to the map view.

The map label for this gene is 113474445

Identifier: 113474445

GI number: 113474445

Start: 945800

End: 947590

Strand: Direct

Name: 113474445

Synonym: Tery_0589

Alternate gene names: NA

Gene position: 945800-947590 (Clockwise)

Preceding gene: 113474444

Following gene: 113474447

Centisome position: 12.2

GC content: 39.81

Gene sequence:

>1791_bases
ATGATTAGAAAAAAATCATCCTCTGCCTTAAAAATTATTCCCCTTGGTGGATTGCATGAGATAGGCAAAAATACTTGTAT
ATTCGAGTACGATGACGAAATTATTATACTTGATGCGGGATTAGCTTTTCCCACAGATGGAATGCACGGTGTAAATATAG
TTTTACCAGATGTAACCTATCTGTATGAAAATCGTCATAAAATTAAAGGCATGATTGTCACTCACGGTCACGAAGATCAT
ATTGGTGGCATACCTTTCCATTTGAAAAATATGGAAATTCCAGTCATCTATGGACCAAAACTGGCGATGGCTCTACTTTA
CCATAAATTAGAGGAGGCAGGAGTTCAAAATCGTACAGAGTTGAAGACTGTTTGCCCCCGTGACATTGTTAAATTGGGTA
GATATTTCATTATAGAATATATTCGTAATACTCACTCAATGGCGGATAGCTTTACTGTAGCAATCACAACACCAGTGGGA
GTAGTTATCCATACAGGTGACTTCAAAATTGACCATACTCCTGTAGATGGAGAAAAGTTCGATCTGCAAAAACTTGCGGA
ATATGGAGAGAAAGGAGTTCACTGCCTAATTAGTGACTCTACAAATTCAGAAGTACCAGGTTTCACTCCTTCAGAAAAAT
CGGTTTATCCAAGTCTAGACCGAGTATTGTCTGAAGCAGCAGGACGTGTGATGCTGACAACTTTTGCCTCTAGTGTACAT
AGACTACAAATAGTTTTGGAGCTAGCAAAAAAACATGGTAGGTTAGTGGCAATAGTAGGACGATCTATGCTGAATGTGAT
TGCTCATGCTCGCAATCTGGGTTACATTAAGTGTGAAGATAGTTTGTTTGTACCTTTGCATACTGTCCGAAGTGTGCCTG
ATGAAAAATTGTTTATTTTGACTACGGGTTCTCAGGGGGAACCAATGTCAGCACTTACTCGTATTGCTAAAGGTGAACAT
AGGCAAATAAAAATTCGCCAAGGTGATACAGTGATATTCTCTGCAAATCCTATCCCTGGTAATACGATCGCTGTTGTCAA
TACTATAGATAAACTAATGATGCTAGGAGCAAATGTTGTTTATGGAAAAGACAAAGGCATTCATGTTTCTGGTCACGGTT
GTCAGGAAGATCAAAAATTAATGTTAGCCCTAACTCGTCCGAAATTTTTTATACCATTTCATGGAGAGCATAGGATGTTG
GTGAAACACAGCCAGACGGCTCAAGGTATGGGAGTTCCGCGAGAGAACATGGTTGTGATTCAAAATGGAGATGTGGTGGA
ACTGACTCAAGATTCTATTTATGTTGCAGATAAAGTATCTTCTGGTATTGAATTGCTAGACTCTTCCCGTTCTGGTATGG
TTGAAGACAAGATTCTCAAGGAACGCCAACAACTAGCAGAGGATGGTGTTGTTACTATAGCCCTGGCAGTTGGTTTGAAT
GGTAAATTGATTGGTCAACCTCAGTTACATTTGCGTGGTGTTGTGAGTTCTGTGGACAAAGTAGAGTTGCAAGAACTGGT
GATTAGGGTATTAGAGAAAGAGTTGAGTTCTTACTGGTCTGAGTATGTTAACTCTAATGGTCATGACAATACTCAAGTTG
ATTGGTCTAGGTTGCAAGATCAGCTTGAATGTAGTGTTCAGAGAATGTTAAGACGAGAGTTTCAAGGTCAACCCTTATTG
GTTTTCTTGATGCAAACTCCAGATGCGGAAGGTCAAGAACGTGAAACAGATATTAAAGTGAAACCTGTGGGAAGACGGCG
ACGGAGATCTACTGCTAAGGTAGCATCTTGA

Upstream 100 bases:

>100_bases
TGTATAAGAGGTTAGTTTTCCTAAATTTTAATAGGTATAAAGTATAATTAATAATTACTCAAAATCAAAAAAAGTAAAGA
AAAATAAAAATAGGATAATT

Downstream 100 bases:

>100_bases
GTGCTTTGAAGTCAAAACTCATCCATTCAAAGGTCAAAAGTAAGGTTTTTGATGGATGAAAACTTTGATAATAGTAGGAA
GTTCTAATGGAGAGGGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 596; Mature: 596

Protein sequence:

>596_residues
MIRKKSSSALKIIPLGGLHEIGKNTCIFEYDDEIIILDAGLAFPTDGMHGVNIVLPDVTYLYENRHKIKGMIVTHGHEDH
IGGIPFHLKNMEIPVIYGPKLAMALLYHKLEEAGVQNRTELKTVCPRDIVKLGRYFIIEYIRNTHSMADSFTVAITTPVG
VVIHTGDFKIDHTPVDGEKFDLQKLAEYGEKGVHCLISDSTNSEVPGFTPSEKSVYPSLDRVLSEAAGRVMLTTFASSVH
RLQIVLELAKKHGRLVAIVGRSMLNVIAHARNLGYIKCEDSLFVPLHTVRSVPDEKLFILTTGSQGEPMSALTRIAKGEH
RQIKIRQGDTVIFSANPIPGNTIAVVNTIDKLMMLGANVVYGKDKGIHVSGHGCQEDQKLMLALTRPKFFIPFHGEHRML
VKHSQTAQGMGVPRENMVVIQNGDVVELTQDSIYVADKVSSGIELLDSSRSGMVEDKILKERQQLAEDGVVTIALAVGLN
GKLIGQPQLHLRGVVSSVDKVELQELVIRVLEKELSSYWSEYVNSNGHDNTQVDWSRLQDQLECSVQRMLRREFQGQPLL
VFLMQTPDAEGQERETDIKVKPVGRRRRRSTAKVAS

Sequences:

>Translated_596_residues
MIRKKSSSALKIIPLGGLHEIGKNTCIFEYDDEIIILDAGLAFPTDGMHGVNIVLPDVTYLYENRHKIKGMIVTHGHEDH
IGGIPFHLKNMEIPVIYGPKLAMALLYHKLEEAGVQNRTELKTVCPRDIVKLGRYFIIEYIRNTHSMADSFTVAITTPVG
VVIHTGDFKIDHTPVDGEKFDLQKLAEYGEKGVHCLISDSTNSEVPGFTPSEKSVYPSLDRVLSEAAGRVMLTTFASSVH
RLQIVLELAKKHGRLVAIVGRSMLNVIAHARNLGYIKCEDSLFVPLHTVRSVPDEKLFILTTGSQGEPMSALTRIAKGEH
RQIKIRQGDTVIFSANPIPGNTIAVVNTIDKLMMLGANVVYGKDKGIHVSGHGCQEDQKLMLALTRPKFFIPFHGEHRML
VKHSQTAQGMGVPRENMVVIQNGDVVELTQDSIYVADKVSSGIELLDSSRSGMVEDKILKERQQLAEDGVVTIALAVGLN
GKLIGQPQLHLRGVVSSVDKVELQELVIRVLEKELSSYWSEYVNSNGHDNTQVDWSRLQDQLECSVQRMLRREFQGQPLL
VFLMQTPDAEGQERETDIKVKPVGRRRRRSTAKVAS
>Mature_596_residues
MIRKKSSSALKIIPLGGLHEIGKNTCIFEYDDEIIILDAGLAFPTDGMHGVNIVLPDVTYLYENRHKIKGMIVTHGHEDH
IGGIPFHLKNMEIPVIYGPKLAMALLYHKLEEAGVQNRTELKTVCPRDIVKLGRYFIIEYIRNTHSMADSFTVAITTPVG
VVIHTGDFKIDHTPVDGEKFDLQKLAEYGEKGVHCLISDSTNSEVPGFTPSEKSVYPSLDRVLSEAAGRVMLTTFASSVH
RLQIVLELAKKHGRLVAIVGRSMLNVIAHARNLGYIKCEDSLFVPLHTVRSVPDEKLFILTTGSQGEPMSALTRIAKGEH
RQIKIRQGDTVIFSANPIPGNTIAVVNTIDKLMMLGANVVYGKDKGIHVSGHGCQEDQKLMLALTRPKFFIPFHGEHRML
VKHSQTAQGMGVPRENMVVIQNGDVVELTQDSIYVADKVSSGIELLDSSRSGMVEDKILKERQQLAEDGVVTIALAVGLN
GKLIGQPQLHLRGVVSSVDKVELQELVIRVLEKELSSYWSEYVNSNGHDNTQVDWSRLQDQLECSVQRMLRREFQGQPLL
VFLMQTPDAEGQERETDIKVKPVGRRRRRSTAKVAS

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR004613
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 66274; Mature: 66274

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKKSSSALKIIPLGGLHEIGKNTCIFEYDDEIIILDAGLAFPTDGMHGVNIVLPDVTY
CCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEECCHHH
LYENRHKIKGMIVTHGHEDHIGGIPFHLKNMEIPVIYGPKLAMALLYHKLEEAGVQNRTE
HHCCCCEEEEEEEECCCCCCCCCCCEEECCEEEEEEECCHHHHHHHHHHHHHCCCCCCHH
LKTVCPRDIVKLGRYFIIEYIRNTHSMADSFTVAITTPVGVVIHTGDFKIDHTPVDGEKF
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEECCCCCCCCC
DLQKLAEYGEKGVHCLISDSTNSEVPGFTPSEKSVYPSLDRVLSEAAGRVMLTTFASSVH
CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
RLQIVLELAKKHGRLVAIVGRSMLNVIAHARNLGYIKCEDSLFVPLHTVRSVPDEKLFIL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHCCCCCEEEEE
TTGSQGEPMSALTRIAKGEHRQIKIRQGDTVIFSANPIPGNTIAVVNTIDKLMMLGANVV
EECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHCCEEE
YGKDKGIHVSGHGCQEDQKLMLALTRPKFFIPFHGEHRMLVKHSQTAQGMGVPRENMVVI
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE
QNGDVVELTQDSIYVADKVSSGIELLDSSRSGMVEDKILKERQQLAEDGVVTIALAVGLN
ECCCEEEEECCCEEEEHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLIGQPQLHLRGVVSSVDKVELQELVIRVLEKELSSYWSEYVNSNGHDNTQVDWSRLQD
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
QLECSVQRMLRREFQGQPLLVFLMQTPDAEGQERETDIKVKPVGRRRRRSTAKVAS
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHCHHCCCC
>Mature Secondary Structure
MIRKKSSSALKIIPLGGLHEIGKNTCIFEYDDEIIILDAGLAFPTDGMHGVNIVLPDVTY
CCCCCCCCCEEEEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEECCHHH
LYENRHKIKGMIVTHGHEDHIGGIPFHLKNMEIPVIYGPKLAMALLYHKLEEAGVQNRTE
HHCCCCEEEEEEEECCCCCCCCCCCEEECCEEEEEEECCHHHHHHHHHHHHHCCCCCCHH
LKTVCPRDIVKLGRYFIIEYIRNTHSMADSFTVAITTPVGVVIHTGDFKIDHTPVDGEKF
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCCEEEECCCCCCCCC
DLQKLAEYGEKGVHCLISDSTNSEVPGFTPSEKSVYPSLDRVLSEAAGRVMLTTFASSVH
CHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEHHHHHHH
RLQIVLELAKKHGRLVAIVGRSMLNVIAHARNLGYIKCEDSLFVPLHTVRSVPDEKLFIL
HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCEEEECCCEEEEHHHHHCCCCCEEEEE
TTGSQGEPMSALTRIAKGEHRQIKIRQGDTVIFSANPIPGNTIAVVNTIDKLMMLGANVV
EECCCCCCHHHHHHHHCCCCCEEEEECCCEEEEECCCCCCCCEEEHHHHHHHHHHCCEEE
YGKDKGIHVSGHGCQEDQKLMLALTRPKFFIPFHGEHRMLVKHSQTAQGMGVPRENMVVI
EECCCCEEECCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE
QNGDVVELTQDSIYVADKVSSGIELLDSSRSGMVEDKILKERQQLAEDGVVTIALAVGLN
ECCCEEEEECCCEEEEHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCC
GKLIGQPQLHLRGVVSSVDKVELQELVIRVLEKELSSYWSEYVNSNGHDNTQVDWSRLQD
CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
QLECSVQRMLRREFQGQPLLVFLMQTPDAEGQERETDIKVKPVGRRRRRSTAKVAS
HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEECCCHHHHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]