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The map label for this gene is ydcM [C]

Identifier: 113474352

GI number: 113474352

Start: 774747

End: 775223

Strand: Reverse

Name: ydcM [C]

Synonym: Tery_0484

Alternate gene names: 113474352

Gene position: 775223-774747 (Counterclockwise)

Preceding gene: 113474353

Following gene: 113474351

Centisome position: 10.0

GC content: 28.93

Gene sequence:

>477_bases
ATGGCTTATTTACAAAAATCTTTTTTCCATGATTCCATAAGGTATTATAGCTTGGTAGAAATTAATCGAGAATTATTACC
TCAAACTGATAATTCAGTAGATATAGATTTAGGCATCAAAACTTTTACTACTTTAAGTAATAGTAAAAAAATAGATGCAC
CAAAACCTTTGAAGAAACTAATTAAGAAGTATATATTACAGAGTAAGTCATTATTTAAAAAATGCTTAGGTTCCAAACGG
TACGAAAAAGCTAGATTGAAAGTTACTAAATTTCATAATCAACTTAAAGATACAAGATATGACTTTCTGCATAAGTTATT
AACCAGTATTATTAACTACAACCAAATAATTGTACTGGAAGTTTCTAATGTGTCTGAAATGCTCAAGAAGTGGTGCAACC
TTGCAATAATAATAGTTGCAAGGAAAAACGCACCAAAACATAGTCAATTATCCAAGGCAATTAGCGATCTAAGTTAG

Upstream 100 bases:

>100_bases
GTTGATGTAATTCTCTATATCTTATAAAATGTAAGCTTTGAGCATTCTTTAAGATTTATTTTATAGATACTTGACAAGAG
TGATCAGCTACTACAATTAA

Downstream 100 bases:

>100_bases
GGACAATTCCGAACATTTCTAGAAAGAAAAAGGGAAAAATACCGTCGTTATTTTAGGGTAATTAATAGATGGGAAGCAGC
ATATCAAACCCACTATTATT

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAYLQKSFFHDSIRYYSLVEINRELLPQTDNSVDIDLGIKTFTTLSNSKKIDAPKPLKKLIKKYILQSKSLFKKCLGSKR
YEKARLKVTKFHNQLKDTRYDFLHKLLTSIINYNQIIVLEVSNVSEMLKKWCNLAIIIVARKNAPKHSQLSKAISDLS

Sequences:

>Translated_158_residues
MAYLQKSFFHDSIRYYSLVEINRELLPQTDNSVDIDLGIKTFTTLSNSKKIDAPKPLKKLIKKYILQSKSLFKKCLGSKR
YEKARLKVTKFHNQLKDTRYDFLHKLLTSIINYNQIIVLEVSNVSEMLKKWCNLAIIIVARKNAPKHSQLSKAISDLS
>Mature_157_residues
AYLQKSFFHDSIRYYSLVEINRELLPQTDNSVDIDLGIKTFTTLSNSKKIDAPKPLKKLIKKYILQSKSLFKKCLGSKRY
EKARLKVTKFHNQLKDTRYDFLHKLLTSIINYNQIIVLEVSNVSEMLKKWCNLAIIIVARKNAPKHSQLSKAISDLS

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 18363; Mature: 18232

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYLQKSFFHDSIRYYSLVEINRELLPQTDNSVDIDLGIKTFTTLSNSKKIDAPKPLKKL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCHHHHHH
IKKYILQSKSLFKKCLGSKRYEKARLKVTKFHNQLKDTRYDFLHKLLTSIINYNQIIVLE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VSNVSEMLKKWCNLAIIIVARKNAPKHSQLSKAISDLS
ECCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCC
>Mature Secondary Structure 
AYLQKSFFHDSIRYYSLVEINRELLPQTDNSVDIDLGIKTFTTLSNSKKIDAPKPLKKL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHCCCCCCCCCCHHHHHH
IKKYILQSKSLFKKCLGSKRYEKARLKVTKFHNQLKDTRYDFLHKLLTSIINYNQIIVLE
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
VSNVSEMLKKWCNLAIIIVARKNAPKHSQLSKAISDLS
ECCHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]