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The map label for this gene is ykfC [H]

Identifier: 113474303

GI number: 113474303

Start: 680792

End: 682300

Strand: Reverse

Name: ykfC [H]

Synonym: Tery_0432

Alternate gene names: 113474303

Gene position: 682300-680792 (Counterclockwise)

Preceding gene: 113474304

Following gene: 113474301

Centisome position: 8.8

GC content: 36.85

Gene sequence:

>1509_bases
ATGACTAAAACACGGAAAAATCCGATGGTGGTATGGACACCTGTGAACTGGCGAAAACTAAAACGCGTGGTGTACAAGTT
GCAAAAAAGAATCTATCAAGCTGCTCAAAGGGGAGATGTCAAGGCGGTAAGAAAACTGCAAAAGACCCTGTTAAATTCTT
GGTCGGCTAAAATGCTGGCGACTCGCAGAGTAATACAGGATAATAAAGGTCAGAAAACTGCGGGTATTGATGGCAAGAAA
AGTCTAACGCTCAAAGAAAGAGTAAACTTGGCCAATAACTTAGTAATGAGCCATAAAGCCAAATCTACTTGTAGAATATG
GATTCCCAAACCAGGGAAGACAGAAAAAAGACCTTTAGGAATTCTGACAATATCTGAAAGAGCAAAGCAAGGGCTTGTGA
AGATGGCAATAGAACCTGAATGGGAAGCTAAATTTGAACCTAATATTTATGGTTTCAGACCGGGCAGAAGTTGTATGGAT
GCCGTAGAAGGAATTAAAGCAGCAATAAAGCAGAAAAGTAAATATGTCTTGAATGCTGATATTGCCAAATGCTTTGATAA
TATTGACCACGAAAAGCTGTTAGATAAAATTGGAACCTTTCCAAAAGTCAGGAGACAGATTAAAGCTTGGCTCAAGTCTG
GAGTATATGACAATGAGTCGTGGTTCCTAATGGATGAAGGTATCTCCCAAGGAGAAGTAATCTCAGGGTTATGGGCAAAT
ATCGCCTTACATGGGATGGAGAAAATTGTTAAGGAATTTGCTTATAGTCTTTCGGGAAAAAAGGTTAAAAATGAGAAAGA
AATAACTTTGGTAAGATATGCAGATCATTTTGTAATACTTCACCCGAATTTGAATGTGGTTACAAAAGCAAAAGCCTTAG
TAGAGGAATTTCTTAGAGGAATGGGGCTAGAACTCAAACCAGAAAAAACTCGTTTAACTCATACACTCATTCAGGTAGGA
GAAGAGGAACCGGGTTTTAATTTCCTTGGCTTTAACATTCGTCAATATCCAGTAGGAAAATATACAACAGGCAAAAATAC
ATACGGAAAACCATTAGGATACAAAACCTACATAATGCCAAGTAAAGAGGAAATCAAAGCTCATTATCAAAGATTAGCCT
CTGAGATTGACAAATTCAAATCTTGCAAATCTCAGATAGATTTAATCAAGGGATTAAATCCAATTATTACTGGATGGAGT
AACTATTACTCAAAAGTTAATAGTGCTAAAACATTTAAGGAGCTTGACCACCTCTTAACTTTAAAATTAATTGCATGGGG
TAAGTCTAGACATCATCACAAGTCGATAAAAGAGACGATTAAAAAATATTTTGGCACCAAAGGTAAAAGCAATTGGATAT
TCAAAACAATTGAAAACGGTAATAGAATCTGTCTTGTATATCACGAAGACTTTCAGATCAAAAACTTTGTGAAGGTAAAG
GGAGAGAGTAGTCCATATGATGGAAATCTAATCTACTGGACTACCCGTATGGGAAAAAGTGCTGAATGA

Upstream 100 bases:

>100_bases
GAAGAGATGGAATCAGAAGCTAATGCTTATTTGTAATAAATAGGATATGCAGACAAATTCCCGATGATTTGGAAGATGGA
GTTTTGAATAGCAATGAATA

Downstream 100 bases:

>100_bases
CCAACAAAAGTTGCCAAAGTGCTCAAGAAACAATCAGGAAAATATACAGAATGTAGTATGTACTTCACCAGATGAAGATG
TAATGGAAAGGGAAGATAAG

Product: RNA-directed DNA polymerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MTKTRKNPMVVWTPVNWRKLKRVVYKLQKRIYQAAQRGDVKAVRKLQKTLLNSWSAKMLATRRVIQDNKGQKTAGIDGKK
SLTLKERVNLANNLVMSHKAKSTCRIWIPKPGKTEKRPLGILTISERAKQGLVKMAIEPEWEAKFEPNIYGFRPGRSCMD
AVEGIKAAIKQKSKYVLNADIAKCFDNIDHEKLLDKIGTFPKVRRQIKAWLKSGVYDNESWFLMDEGISQGEVISGLWAN
IALHGMEKIVKEFAYSLSGKKVKNEKEITLVRYADHFVILHPNLNVVTKAKALVEEFLRGMGLELKPEKTRLTHTLIQVG
EEEPGFNFLGFNIRQYPVGKYTTGKNTYGKPLGYKTYIMPSKEEIKAHYQRLASEIDKFKSCKSQIDLIKGLNPIITGWS
NYYSKVNSAKTFKELDHLLTLKLIAWGKSRHHHKSIKETIKKYFGTKGKSNWIFKTIENGNRICLVYHEDFQIKNFVKVK
GESSPYDGNLIYWTTRMGKSAE

Sequences:

>Translated_502_residues
MTKTRKNPMVVWTPVNWRKLKRVVYKLQKRIYQAAQRGDVKAVRKLQKTLLNSWSAKMLATRRVIQDNKGQKTAGIDGKK
SLTLKERVNLANNLVMSHKAKSTCRIWIPKPGKTEKRPLGILTISERAKQGLVKMAIEPEWEAKFEPNIYGFRPGRSCMD
AVEGIKAAIKQKSKYVLNADIAKCFDNIDHEKLLDKIGTFPKVRRQIKAWLKSGVYDNESWFLMDEGISQGEVISGLWAN
IALHGMEKIVKEFAYSLSGKKVKNEKEITLVRYADHFVILHPNLNVVTKAKALVEEFLRGMGLELKPEKTRLTHTLIQVG
EEEPGFNFLGFNIRQYPVGKYTTGKNTYGKPLGYKTYIMPSKEEIKAHYQRLASEIDKFKSCKSQIDLIKGLNPIITGWS
NYYSKVNSAKTFKELDHLLTLKLIAWGKSRHHHKSIKETIKKYFGTKGKSNWIFKTIENGNRICLVYHEDFQIKNFVKVK
GESSPYDGNLIYWTTRMGKSAE
>Mature_501_residues
TKTRKNPMVVWTPVNWRKLKRVVYKLQKRIYQAAQRGDVKAVRKLQKTLLNSWSAKMLATRRVIQDNKGQKTAGIDGKKS
LTLKERVNLANNLVMSHKAKSTCRIWIPKPGKTEKRPLGILTISERAKQGLVKMAIEPEWEAKFEPNIYGFRPGRSCMDA
VEGIKAAIKQKSKYVLNADIAKCFDNIDHEKLLDKIGTFPKVRRQIKAWLKSGVYDNESWFLMDEGISQGEVISGLWANI
ALHGMEKIVKEFAYSLSGKKVKNEKEITLVRYADHFVILHPNLNVVTKAKALVEEFLRGMGLELKPEKTRLTHTLIQVGE
EEPGFNFLGFNIRQYPVGKYTTGKNTYGKPLGYKTYIMPSKEEIKAHYQRLASEIDKFKSCKSQIDLIKGLNPIITGWSN
YYSKVNSAKTFKELDHLLTLKLIAWGKSRHHHKSIKETIKKYFGTKGKSNWIFKTIENGNRICLVYHEDFQIKNFVKVKG
ESSPYDGNLIYWTTRMGKSAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 57662; Mature: 57531

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTRKNPMVVWTPVNWRKLKRVVYKLQKRIYQAAQRGDVKAVRKLQKTLLNSWSAKMLA
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TRRVIQDNKGQKTAGIDGKKSLTLKERVNLANNLVMSHKAKSTCRIWIPKPGKTEKRPLG
HHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEE
ILTISERAKQGLVKMAIEPEWEAKFEPNIYGFRPGRSCMDAVEGIKAAIKQKSKYVLNAD
EEEECHHHHCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEHH
IAKCFDNIDHEKLLDKIGTFPKVRRQIKAWLKSGVYDNESWFLMDEGISQGEVISGLWAN
HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
IALHGMEKIVKEFAYSLSGKKVKNEKEITLVRYADHFVILHPNLNVVTKAKALVEEFLRG
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHHHHHHH
MGLELKPEKTRLTHTLIQVGEEEPGFNFLGFNIRQYPVGKYTTGKNTYGKPLGYKTYIMP
CCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCCEECCCCCCCCCCCEEEEECC
SKEEIKAHYQRLASEIDKFKSCKSQIDLIKGLNPIITGWSNYYSKVNSAKTFKELDHLLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
LKLIAWGKSRHHHKSIKETIKKYFGTKGKSNWIFKTIENGNRICLVYHEDFQIKNFVKVK
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEEC
GESSPYDGNLIYWTTRMGKSAE
CCCCCCCCCEEEEEECCCCCCC
>Mature Secondary Structure 
TKTRKNPMVVWTPVNWRKLKRVVYKLQKRIYQAAQRGDVKAVRKLQKTLLNSWSAKMLA
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TRRVIQDNKGQKTAGIDGKKSLTLKERVNLANNLVMSHKAKSTCRIWIPKPGKTEKRPLG
HHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEE
ILTISERAKQGLVKMAIEPEWEAKFEPNIYGFRPGRSCMDAVEGIKAAIKQKSKYVLNAD
EEEECHHHHCCCEEEEECCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCEEEEHH
IAKCFDNIDHEKLLDKIGTFPKVRRQIKAWLKSGVYDNESWFLMDEGISQGEVISGLWAN
HHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHH
IALHGMEKIVKEFAYSLSGKKVKNEKEITLVRYADHFVILHPNLNVVTKAKALVEEFLRG
HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECEEEEECCCCCHHHHHHHHHHHHHHH
MGLELKPEKTRLTHTLIQVGEEEPGFNFLGFNIRQYPVGKYTTGKNTYGKPLGYKTYIMP
CCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEECCCCCEECCCCCCCCCCCEEEEECC
SKEEIKAHYQRLASEIDKFKSCKSQIDLIKGLNPIITGWSNYYSKVNSAKTFKELDHLLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH
LKLIAWGKSRHHHKSIKETIKKYFGTKGKSNWIFKTIENGNRICLVYHEDFQIKNFVKVK
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEECCCCCCCEEEEC
GESSPYDGNLIYWTTRMGKSAE
CCCCCCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]