| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yeiJ [C]
Identifier: 113474218
GI number: 113474218
Start: 506652
End: 507881
Strand: Reverse
Name: yeiJ [C]
Synonym: Tery_0332
Alternate gene names: 113474218
Gene position: 507881-506652 (Counterclockwise)
Preceding gene: 113474221
Following gene: 113474217
Centisome position: 6.55
GC content: 37.97
Gene sequence:
>1230_bases GTGGAAAGATTAATATCAGCACTGGGGTTAATAGTTTTTATAGGTTTAGCTATTCTGTTATCGGCAAAAAGAAATGCAAT TAAGTGGGAAACTGTTTTATGGGGAATAGGTTTGCAACTATTATTTGCACTGCTAATTTTAAAAAGCAAAACAGGTTTAG CAGTGTTTAAATTTATTGCCGATATAATTAGTCAGTTACTCAAATTTTCTGATGCCGGGGCTAAATTTGTATTTGGAGAA AACTATCTCGAACACTTTTTTGCCTTCCAGATACTACCAACAATTATATTTTTTTCTTCATTAATTACTATCTTATATCA TTATGGAATTTTACAACAAGTAGTCAAAGCATTTGCATGGATAATGCTGAAAACTATGAAAACTTCTGGCACAGAGTCTC TCGCTTGTTCCGCTAATATTTTTGTGGGGTCAACAGAAGCACCGTTGATGATTAAACCTTATGTGAAAACAATGACGAAA TCAGAATTACACGCAGTGATGACAGGTGGTTTTGCTACAGTCGCTGGAGGAGTATTGGCAGCTTATATTTCTTTTGGAGT ACCTGCCGAACATTTAATTGCTGCCTCGGTAATGTCAGCACCTGCAGCATTGGCAATATCAAAAATATTGTTGCCAGAAA CAGAAGAGTCTCCGACGGCAGGAACGGTCAAGGTAGAGGTAGAACAGACTTATGCAAATGTTATTGATGCAGCAACATTA GGTGCTAAAGAGGGAGCAAAATTGGCTGTCAATGTGGCAGCAATGTTAATTGCTTTTTTAGGGTTGGTAGCAATGGTCAA TGGACTATTAGCATGGATAGGTAATGGTATTGGGTTGCCTCAGTTATCCTTGGAGTGGGTTTTCTCTTTATTATTTGCTC CTGTTGCTTGGTTGATGGGAGTGCCTTGGGGAGACTGTCCTCAAGTGGGGATCTTGTTGGGTAAGAAAACAATTTTGAAT GAATTTATCGCTTATTTAGATTTAAAGACACTCATTGAAAATGCTCAAAAAGGTGAAATGGTAAATGTGATTTCTGAGCG ATCGCAGATTATTGCTACTTATGCTTTATGTGGGTTTTCTAATATTGGTTCCATTGCTGTACAGATAGGTGGAATTAGTA CCATTGCACCATCACGACAGGGTGATTTGGCAAAGTTGGGAGTTCGAGCAATGATAGGTGGATCTATTGCTTGTTTTATG ACTGCTTGTATCGCAGGAATTTTGTTGTAG
Upstream 100 bases:
>100_bases TTATATAGCAAATATATAGTAAATATTTAATATGATCAGATATTTCGTGATGATTAATTTCAGAAAATAGTATAATAAAT TAAGGGATATATAATTAATT
Downstream 100 bases:
>100_bases AAATTTCCCTATTTTTGGCAAATAATTTCTCGAAATAGTGCTTTTTCTACTCAAAGATAGCGTTCCCATTACTTGGGCTA GAAGTCTGAAATTATTATGC
Product: Na+ dependent nucleoside transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 409; Mature: 409
Protein sequence:
>409_residues MERLISALGLIVFIGLAILLSAKRNAIKWETVLWGIGLQLLFALLILKSKTGLAVFKFIADIISQLLKFSDAGAKFVFGE NYLEHFFAFQILPTIIFFSSLITILYHYGILQQVVKAFAWIMLKTMKTSGTESLACSANIFVGSTEAPLMIKPYVKTMTK SELHAVMTGGFATVAGGVLAAYISFGVPAEHLIAASVMSAPAALAISKILLPETEESPTAGTVKVEVEQTYANVIDAATL GAKEGAKLAVNVAAMLIAFLGLVAMVNGLLAWIGNGIGLPQLSLEWVFSLLFAPVAWLMGVPWGDCPQVGILLGKKTILN EFIAYLDLKTLIENAQKGEMVNVISERSQIIATYALCGFSNIGSIAVQIGGISTIAPSRQGDLAKLGVRAMIGGSIACFM TACIAGILL
Sequences:
>Translated_409_residues MERLISALGLIVFIGLAILLSAKRNAIKWETVLWGIGLQLLFALLILKSKTGLAVFKFIADIISQLLKFSDAGAKFVFGE NYLEHFFAFQILPTIIFFSSLITILYHYGILQQVVKAFAWIMLKTMKTSGTESLACSANIFVGSTEAPLMIKPYVKTMTK SELHAVMTGGFATVAGGVLAAYISFGVPAEHLIAASVMSAPAALAISKILLPETEESPTAGTVKVEVEQTYANVIDAATL GAKEGAKLAVNVAAMLIAFLGLVAMVNGLLAWIGNGIGLPQLSLEWVFSLLFAPVAWLMGVPWGDCPQVGILLGKKTILN EFIAYLDLKTLIENAQKGEMVNVISERSQIIATYALCGFSNIGSIAVQIGGISTIAPSRQGDLAKLGVRAMIGGSIACFM TACIAGILL >Mature_409_residues MERLISALGLIVFIGLAILLSAKRNAIKWETVLWGIGLQLLFALLILKSKTGLAVFKFIADIISQLLKFSDAGAKFVFGE NYLEHFFAFQILPTIIFFSSLITILYHYGILQQVVKAFAWIMLKTMKTSGTESLACSANIFVGSTEAPLMIKPYVKTMTK SELHAVMTGGFATVAGGVLAAYISFGVPAEHLIAASVMSAPAALAISKILLPETEESPTAGTVKVEVEQTYANVIDAATL GAKEGAKLAVNVAAMLIAFLGLVAMVNGLLAWIGNGIGLPQLSLEWVFSLLFAPVAWLMGVPWGDCPQVGILLGKKTILN EFIAYLDLKTLIENAQKGEMVNVISERSQIIATYALCGFSNIGSIAVQIGGISTIAPSRQGDLAKLGVRAMIGGSIACFM TACIAGILL
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI11545853, Length=414, Percent_Identity=49.2753623188406, Blast_Score=386, Evalue=1e-107, Organism=Homo sapiens, GI42542381, Length=416, Percent_Identity=44.4711538461538, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI227116277, Length=415, Percent_Identity=44.3373493975904, Blast_Score=351, Evalue=5e-97, Organism=Escherichia coli, GI1788485, Length=419, Percent_Identity=33.1742243436754, Blast_Score=244, Evalue=5e-66, Organism=Escherichia coli, GI1788488, Length=419, Percent_Identity=33.4128878281623, Blast_Score=229, Evalue=3e-61, Organism=Escherichia coli, GI1788737, Length=418, Percent_Identity=26.0765550239234, Blast_Score=150, Evalue=1e-37, Organism=Caenorhabditis elegans, GI71991794, Length=419, Percent_Identity=35.799522673031, Blast_Score=234, Evalue=5e-62, Organism=Caenorhabditis elegans, GI17560276, Length=402, Percent_Identity=35.5721393034826, Blast_Score=231, Evalue=6e-61, Organism=Caenorhabditis elegans, GI25146537, Length=216, Percent_Identity=36.5740740740741, Blast_Score=135, Evalue=6e-32, Organism=Drosophila melanogaster, GI45552517, Length=410, Percent_Identity=42.6829268292683, Blast_Score=330, Evalue=1e-90, Organism=Drosophila melanogaster, GI19921868, Length=410, Percent_Identity=42.6829268292683, Blast_Score=330, Evalue=1e-90, Organism=Drosophila melanogaster, GI45552519, Length=410, Percent_Identity=42.6829268292683, Blast_Score=330, Evalue=1e-90, Organism=Drosophila melanogaster, GI281360430, Length=409, Percent_Identity=37.8973105134474, Blast_Score=278, Evalue=4e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43484; Mature: 43484
Theoretical pI: Translated: 8.19; Mature: 8.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERLISALGLIVFIGLAILLSAKRNAIKWETVLWGIGLQLLFALLILKSKTGLAVFKFIA CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DIISQLLKFSDAGAKFVFGENYLEHFFAFQILPTIIFFSSLITILYHYGILQQVVKAFAW HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMLKTMKTSGTESLACSANIFVGSTEAPLMIKPYVKTMTKSELHAVMTGGFATVAGGVLA HHHHHHHCCCCCCEEEECEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHH AYISFGVPAEHLIAASVMSAPAALAISKILLPETEESPTAGTVKVEVEQTYANVIDAATL HHHHCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHC GAKEGAKLAVNVAAMLIAFLGLVAMVNGLLAWIGNGIGLPQLSLEWVFSLLFAPVAWLMG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC VPWGDCPQVGILLGKKTILNEFIAYLDLKTLIENAQKGEMVNVISERSQIIATYALCGFS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC NIGSIAVQIGGISTIAPSRQGDLAKLGVRAMIGGSIACFMTACIAGILL CCCCEEEEECCEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure MERLISALGLIVFIGLAILLSAKRNAIKWETVLWGIGLQLLFALLILKSKTGLAVFKFIA CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH DIISQLLKFSDAGAKFVFGENYLEHFFAFQILPTIIFFSSLITILYHYGILQQVVKAFAW HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IMLKTMKTSGTESLACSANIFVGSTEAPLMIKPYVKTMTKSELHAVMTGGFATVAGGVLA HHHHHHHCCCCCCEEEECEEEEECCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHH AYISFGVPAEHLIAASVMSAPAALAISKILLPETEESPTAGTVKVEVEQTYANVIDAATL HHHHCCCCHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHC GAKEGAKLAVNVAAMLIAFLGLVAMVNGLLAWIGNGIGLPQLSLEWVFSLLFAPVAWLMG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHC VPWGDCPQVGILLGKKTILNEFIAYLDLKTLIENAQKGEMVNVISERSQIIATYALCGFS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC NIGSIAVQIGGISTIAPSRQGDLAKLGVRAMIGGSIACFMTACIAGILL CCCCEEEEECCEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]