Click here to switch to the map view.

The map label for this gene is yiaD [C]

Identifier: 113474200

GI number: 113474200

Start: 480768

End: 481508

Strand: Direct

Name: yiaD [C]

Synonym: Tery_0311

Alternate gene names: 113474200

Gene position: 480768-481508 (Clockwise)

Preceding gene: 113474199

Following gene: 113474205

Centisome position: 6.2

GC content: 35.09

Gene sequence:

>741_bases
ATGGCGATCGCTTTTCAATATCCCTCTACTTCTCAAAAGGTACCCATAGCAGAAAAACTCCTTAATAATTTTAAGAGTAG
AGTATCTGAAAAACAGTTGCCCCTAGTTTCAACTACTCCTCCTGCACCTATTTTAGAAACTATAAAACCCCGCGTTCAAC
TCACTGAGGCAGAAAAAATTGAGTTAGAAACAGAACTGAAACAATTACAAGCACAGCTCAAAACTCTTATTGTTCGTACT
ACAGCTATAGAAAATAAACTAAATATCACTAGAGGTGATATAGATCTAGAAACCAGGTTAAATATAATTGCTCAAGAGTT
AGCTGCTCCCCCTTCTGCAAATAAAAATAAACAGAGAAATCAATATTCTTCACCAGTTTTGACTAAAGCTGACATGGTGA
CTCTTCCTAGCGATATTTTGTTTGAGTCGGGTAGTAATAAAATTCGTTTTGATGGCAGAGTTATTGTAGATAATTTAATT
CGTGAATTGAGAAATTATCAAGATGTAATAATTAGCGTTTCTGGTTATACTGATAATAGAGGAAAAGCAAAAGTCAATCT
AGAAAAGTCATTTTTACAAGCTGAAGTAATAGCAGAATATTTATCAAAAAAATTAGGTCAGGGTTATCGTCTGTTAGCTA
TTGGTTATGGAGAGTCTCGCCCCATCGCAGAAAATGACTCTCAGACTAATAGACAACGTAACCGTCGCATAGAGGTGAAA
GTACATCTGAGAAAAAGGTAA

Upstream 100 bases:

>100_bases
AATTCCCCCTAATTCTCCGGGGATAGGTGTGTTAATACTATCCTTGATATTTCGCTTGTTAGTGCTTGGGATAGCTAGCA
GTTTTTCCTGGGTGCTGGGA

Downstream 100 bases:

>100_bases
GGAGTTTGAAATATGAATTTATCCCACTAATACTAAAACGATGATATTATGATAAGCGTTACTAAGTATATGTAAATTGA
AAGAAAATGCCAGGTAGATT

Product: OmpA/MotB

Products: NA

Alternate protein names: OmpA Family Protein; Outer Membrane Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB; Ompa/Motb Domain Protein; YceI Like Family; OmpA/OmpF Family Outer Membrane Protein; Type I Secretion Outer Membrane Protein lC; V-Type H(+)-Translocating Pyrophosphatase; Thrombospondin Type 3 RepeatOmpA/MotB; OmpA/MotB Family Outer Membrane Protein; OmpA Family Outer Membrane Protein; Thrombospondin Type 3 Repeat Family; Outer Membrane OmpA Family Protein

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAIAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLTEAEKIELETELKQLQAQLKTLIVRT
TAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRNQYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLI
RELRNYQDVIISVSGYTDNRGKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAIGYGESRPIAENDSQTNRQRNRRIEVK
VHLRKR

Sequences:

>Translated_246_residues
MAIAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLTEAEKIELETELKQLQAQLKTLIVRT
TAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRNQYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLI
RELRNYQDVIISVSGYTDNRGKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAIGYGESRPIAENDSQTNRQRNRRIEVK
VHLRKR
>Mature_245_residues
AIAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLTEAEKIELETELKQLQAQLKTLIVRTT
AIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRNQYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLIR
ELRNYQDVIISVSGYTDNRGKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAIGYGESRPIAENDSQTNRQRNRRIEVKV
HLRKR

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27866; Mature: 27735

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLTEAEKI
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEECCCHHH
ELETELKQLQAQLKTLIVRTTAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHH
QYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLIRELRNYQDVIISVSGYTDNR
HCCCCCEECCCEEECCHHHHEECCCCEEEECCEEHHHHHHHHHHCHHEEEEEEECCCCCC
GKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAIGYGESRPIAENDSQTNRQRNRRIEVK
CCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCEEEEE
VHLRKR
EEEECC
>Mature Secondary Structure 
AIAFQYPSTSQKVPIAEKLLNNFKSRVSEKQLPLVSTTPPAPILETIKPRVQLTEAEKI
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEECCCHHH
ELETELKQLQAQLKTLIVRTTAIENKLNITRGDIDLETRLNIIAQELAAPPSANKNKQRN
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHH
QYSSPVLTKADMVTLPSDILFESGSNKIRFDGRVIVDNLIRELRNYQDVIISVSGYTDNR
HCCCCCEECCCEEECCHHHHEECCCCEEEECCEEHHHHHHHHHHCHHEEEEEEECCCCCC
GKAKVNLEKSFLQAEVIAEYLSKKLGQGYRLLAIGYGESRPIAENDSQTNRQRNRRIEVK
CCEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCEEEEE
VHLRKR
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA