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The map label for this gene is ctaD [H]

Identifier: 113474171

GI number: 113474171

Start: 428293

End: 429981

Strand: Reverse

Name: ctaD [H]

Synonym: Tery_0277

Alternate gene names: 113474171

Gene position: 429981-428293 (Counterclockwise)

Preceding gene: 113474172

Following gene: 113474170

Centisome position: 5.55

GC content: 41.56

Gene sequence:

>1689_bases
ATGAAAGAAATAACAATCGAAAGCATCAGCGATGCCATAGAAAAACCAGAACCAGAACAACCACCAAACTGGCGACGATA
CTTCAGTTTTAGCACCGACCATAAAGTTATCGGTATCCAATACCTGGTTACCTCCTTTCTCTTTTTCCTTGTCGGTGGAA
TATTTGCCATGGTGATACGAGGGGAACTAATGACACCAGAATCAGACCTCGTAGACCGCACCATTTACAATGGAATGTTC
ACAATGCACGGCACAGTAATGCTATTTTTGTGGACTTTTCCATCCCTAGTTGGTCTGGCAAACTATCTCGTACCCATAAT
GATCGGAGCGCGAGATATGGCATTCCCTCGTTTAAATGCTGCTGCATTCTGGATGGTGCCAGTAGTCGGTATCCTAATGA
TGGCTAGTTTCTTTGCTCCTGGTGGACCAGCCCAAGCGGGTTGGTGGTCATATCCTCCTGTAAGTATCCAAAACCCTACG
GGTAGCATAATTACTGGTCAGGTAATATGGATTCTTGCGGTTGCAATTTCTGGGGTTTCCTCCATTATGGGAGCGGTCAA
CTTTGTCACAACTATTGTGAGGATGCGATCTCCAGGTATGACTTTTTTCCGAATGCCAGCTTTTGTTTGGACAGTATTTG
CTGCCCAAATAATTCAATTATTCGGACTGCCAGCACTAACAGCAGGCGCAGTAATGTTATTATTTGACATTACAGTAGGA
ACAGGATTTTTTAACCCTGCTAATGGAGGGAACCCAGTTTTATTCCAACACTTTTTCTGGTTTTATTCCCACCCTGCAGT
TTACGTTATCATCCTACCTATATTCGGCATTTTCTCAGAAGTTTTTCCAGTCTATAGTCGTAAACCCCTATTTGGTTACA
AAGTGGTAGTAATTTCATCCATGATCATTGCTGGAGTAAGTGGTCTGGTTTGGGTACACCATATGTATGCTAGTGGTACA
CCTCCTTGGATGCGGATGGTTTTCATGTTGTCAACTATGTGCGTTTCTGTACCAACTGGTATTAAAGTGTTTGCCTGGGT
AGCAACTATTTGGGGTGGAAAAATTCGACTAAATACTCCCATGCTGTTTTCTTTAGGCGGTTTAGTAATGTTTGTGTTTG
CTGGTATTACTGGCATTATGCTCTCTTCCGTTCCTGTAGATATTCACGTTAACAATACATATTTTGTCGTCGGTCATTTT
CATTATGTTCTCTACGGCACCGTGACTATGGGAATGTATTCCGCCATTTATCATTGGTTTCCTAAGATGACTGGGAAAAT
GTATTACGAAGGTTTAGGGCAATTACATTTTTGGTTGTCATTCATCGGCACTAACCTCAACTTTTTACCAATGCACCCAT
TAGGTTTGCAAGGAATGTTGCGTCGTGTTTCTTCCTATGCACCTCAATATGAATTATGGAATGTGCTAGCAAGTCTGGGA
GCATTTTTGTTAGGAATGTCTACTTTGCCATTCATTTTAAATATGGTTAGTTCCTGGATCAAAGGTAAAAAAGCACCTGC
TAACCCTTGGCGAGCAATAGGTTTAGAGTGGATGATTTCTTCCCCACCAGATGTGGAGAATTTTGAGGAACTTCCTATAA
TTATTTCTGAACCCTATGGTTATGGGAAATCAGAACCTTTGACTGCTAATAACCCTAATGGTCATACACAGTTATCAGTT
AATGGTTAA

Upstream 100 bases:

>100_bases
AAGGCTCACTAAAGTTAAAACGAATTCAGATATCCTCACTCTTTTCAAACGAAAAAAACATTACTGAACCCTAGCCTGTA
ATCAAGGAAAAGAATCTTCT

Downstream 100 bases:

>100_bases
CAGTCCTGGGTTGGGTTTTGCTACGCAATATTAAAAGCGACAGCGCAACCCAACAAAAATATCTATCTGTAATATAGCAT
TTCTCAGGGCAGTTAGGAAA

Product: cytochrome-c oxidase

Products: NA

Alternate protein names: Cytochrome aa3 subunit 1; Cytochrome c oxidase polypeptide I; Oxidase aa(3) subunit 1 [H]

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MKEITIESISDAIEKPEPEQPPNWRRYFSFSTDHKVIGIQYLVTSFLFFLVGGIFAMVIRGELMTPESDLVDRTIYNGMF
TMHGTVMLFLWTFPSLVGLANYLVPIMIGARDMAFPRLNAAAFWMVPVVGILMMASFFAPGGPAQAGWWSYPPVSIQNPT
GSIITGQVIWILAVAISGVSSIMGAVNFVTTIVRMRSPGMTFFRMPAFVWTVFAAQIIQLFGLPALTAGAVMLLFDITVG
TGFFNPANGGNPVLFQHFFWFYSHPAVYVIILPIFGIFSEVFPVYSRKPLFGYKVVVISSMIIAGVSGLVWVHHMYASGT
PPWMRMVFMLSTMCVSVPTGIKVFAWVATIWGGKIRLNTPMLFSLGGLVMFVFAGITGIMLSSVPVDIHVNNTYFVVGHF
HYVLYGTVTMGMYSAIYHWFPKMTGKMYYEGLGQLHFWLSFIGTNLNFLPMHPLGLQGMLRRVSSYAPQYELWNVLASLG
AFLLGMSTLPFILNMVSSWIKGKKAPANPWRAIGLEWMISSPPDVENFEELPIIISEPYGYGKSEPLTANNPNGHTQLSV
NG

Sequences:

>Translated_562_residues
MKEITIESISDAIEKPEPEQPPNWRRYFSFSTDHKVIGIQYLVTSFLFFLVGGIFAMVIRGELMTPESDLVDRTIYNGMF
TMHGTVMLFLWTFPSLVGLANYLVPIMIGARDMAFPRLNAAAFWMVPVVGILMMASFFAPGGPAQAGWWSYPPVSIQNPT
GSIITGQVIWILAVAISGVSSIMGAVNFVTTIVRMRSPGMTFFRMPAFVWTVFAAQIIQLFGLPALTAGAVMLLFDITVG
TGFFNPANGGNPVLFQHFFWFYSHPAVYVIILPIFGIFSEVFPVYSRKPLFGYKVVVISSMIIAGVSGLVWVHHMYASGT
PPWMRMVFMLSTMCVSVPTGIKVFAWVATIWGGKIRLNTPMLFSLGGLVMFVFAGITGIMLSSVPVDIHVNNTYFVVGHF
HYVLYGTVTMGMYSAIYHWFPKMTGKMYYEGLGQLHFWLSFIGTNLNFLPMHPLGLQGMLRRVSSYAPQYELWNVLASLG
AFLLGMSTLPFILNMVSSWIKGKKAPANPWRAIGLEWMISSPPDVENFEELPIIISEPYGYGKSEPLTANNPNGHTQLSV
NG
>Mature_562_residues
MKEITIESISDAIEKPEPEQPPNWRRYFSFSTDHKVIGIQYLVTSFLFFLVGGIFAMVIRGELMTPESDLVDRTIYNGMF
TMHGTVMLFLWTFPSLVGLANYLVPIMIGARDMAFPRLNAAAFWMVPVVGILMMASFFAPGGPAQAGWWSYPPVSIQNPT
GSIITGQVIWILAVAISGVSSIMGAVNFVTTIVRMRSPGMTFFRMPAFVWTVFAAQIIQLFGLPALTAGAVMLLFDITVG
TGFFNPANGGNPVLFQHFFWFYSHPAVYVIILPIFGIFSEVFPVYSRKPLFGYKVVVISSMIIAGVSGLVWVHHMYASGT
PPWMRMVFMLSTMCVSVPTGIKVFAWVATIWGGKIRLNTPMLFSLGGLVMFVFAGITGIMLSSVPVDIHVNNTYFVVGHF
HYVLYGTVTMGMYSAIYHWFPKMTGKMYYEGLGQLHFWLSFIGTNLNFLPMHPLGLQGMLRRVSSYAPQYELWNVLASLG
AFLLGMSTLPFILNMVSSWIKGKKAPANPWRAIGLEWMISSPPDVENFEELPIIISEPYGYGKSEPLTANNPNGHTQLSV
NG

Specific function: Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome

COG id: COG0843

COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the heme-copper respiratory oxidase family [H]

Homologues:

Organism=Homo sapiens, GI251831109, Length=505, Percent_Identity=40.1980198019802, Blast_Score=346, Evalue=3e-95,
Organism=Escherichia coli, GI1786634, Length=542, Percent_Identity=34.3173431734317, Blast_Score=339, Evalue=3e-94,
Organism=Saccharomyces cerevisiae, GI6226519, Length=527, Percent_Identity=38.7096774193548, Blast_Score=369, Evalue=1e-103,
Organism=Saccharomyces cerevisiae, GI6226524, Length=323, Percent_Identity=39.6284829721362, Blast_Score=233, Evalue=5e-62,
Organism=Saccharomyces cerevisiae, GI6226523, Length=263, Percent_Identity=35.361216730038, Blast_Score=155, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000883
- InterPro:   IPR014241 [H]

Pfam domain/function: PF00115 COX1 [H]

EC number: =1.9.3.1 [H]

Molecular weight: Translated: 62467; Mature: 62467

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
6.0 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
6.0 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure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CCCCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8399373 [H]