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The map label for this gene is nlpD [C]

Identifier: 113474136

GI number: 113474136

Start: 368911

End: 371385

Strand: Reverse

Name: nlpD [C]

Synonym: Tery_0237

Alternate gene names: 113474136

Gene position: 371385-368911 (Counterclockwise)

Preceding gene: 113474137

Following gene: 113474135

Centisome position: 4.79

GC content: 37.01

Gene sequence:

>2475_bases
ATGAAACGAACATTTCCGAATCAAACTAAGTCTGTTGCTCAGTGTGAACTTCACACAAAAGCAAGTATGGAACAGCTCAA
ACAAACAAATGTAGATAGTACTAAGGCTTGTTCCTCAGCTGCAATGATTGGACTTGCTGCTATCTCAACTACAATGGGTA
CATCAGTCATGATCTTCCCTGGAGATGATGACTCTGCAGTAGCAGCAGAACTTCCTCAAGTAGATAAACTTCAATCATAT
TCTTATCAAGCAAGAATTTTAGAACTAAATGGTGCTGGGGTTAATAGCCAAAAAAGTTTACTGCTGACACAATTGGGATA
TCTAGATACTCAAAGAAATAGTAGTTATGAAGCAGGTGTAACTCAATCTGAAACCGTTTTACCTTTGGGCCAAAAACTAG
GGGCTTCTTTTTCCCCTGTGGAACTTAAACCGAAAAAGTTGATACCAGGACAAATCAATAAGTTGCCTTCTTTAGGATCT
CTGGGCAAATTACAAGGTAAGAAAGCTCTGGGTAATGATTTCAAGCTATTTGAGAAGTTCAAAACAGGAATTAACCCTAT
TCAAGAACAAAAAAAACCCCCAGCAAAAATTTTGGTGGAGTCGAAGTATGAGGAGTTTGTTTCTGAGCCTGTACACAAGC
CTTTTGACTTATCAAAAAAGAAATTACTAGAAAAAAATATATCTCAGAAATCAGAAAATTTAGTTGTTCCCAAAACATCA
CTAGAAATTGCTTCCCCTAAGCTAAATAATAATTCTGATACTAAACAAGTAGCTGAGAATCAAACAGATATTTCTCAAGA
GTCCATTGAAACTGAAGGAAGAAAACTAGAAGCAGTAGTTATTGATTCAGAGATAACATCTACACAAGTTTCATTAATGT
ACAAAGTTCGTTTTGGGGACACATTGAGTTTAATTGCTAATGAGCACAATGTATCTGTTGGATTATTGGCTAAATTTAAT
CAAATTCAAGATCCAGACCGAATTGAAGTTGCAAAATTACTGAAAATTCCTCAGCAATTACCTTCTCAATCATTAACTCT
AACAAGTTATAGAGGTGGAAACTCTACTCACCTAGAATCAAATTCTTCTGAAAAACAAGAATTTGTACAACCAACTCTTG
AGACGACAAACAATCACTTTGATTTTCCAGAAGCTAAGACATCTATAATAGAATCTGATGCTCCATCATATAATAGACTT
AATACAAGTGAACCATTAGCTTCAATAAAAGACAGTTCACATCTGATTTCTTCCCCTCAAGCTACAGACCAAGACTATCA
AATAGATCATAAGTCAAAAGAATTTATAACTTCAAGACAGTCCGTTAATACATATAGCCCCAAAACTCCTCTCGTTAATG
GTAAAGTCTGGCCTACTAATCTAACATCAAAAGTATCCGGGTCAAATTCTTCTACACATTTAGAAAACCAAATCCATCTT
AGTAACAAGCAACCTGTTCAGTTATTGCTAATGGATAGAGATATTCAAGATCGTGAATTAACAATAACTGATAATCAAGA
AAATCCTTATACAAATCGTTTAAGGTCAGAAATTGATAGGTTACGACAGGAATATAATGATCAAAAAGATTTTGAACAAT
CTCAGCTCACCAATTTAGAATCAATAAATACCTCAGTACCTGAAGCACTATCTTCAGAAAATAATTTATCTGTTAATGAT
CAATTTCCTATAGATCAGAACTTTAACAATGGATCCTTCAAGCCAACTGAGAAACGAGAAATTAGTAACCCCACTACCAG
ACAATGGCCTGAAGAGATAGCAGCTAACGGACTAGAAAGAAAAAATACTGCTATAGTTCTGGTTGGATCTATGGAAGAAG
ATGAAATTATTGAATCTCAAGAGTCATCCCTTATACCAACAGCACCAGAAACTTATATTCCAGTTGGATCTGTGGTAGAA
GATGAAATTAGTGAATCTCAAGAGTCATCGCGTATGGCAGCAGCACCAGAAACTTATAACCCAGAGCAGATTCTTAATAA
TCCTTCAATCGGAAAAATGGTTTCTCCAGATTTGCCACCCTTGGGTAAACCTGATTCTTATTTACCTGGTGGCTCAATGC
AATTTACTGGGTATACCTGGCCGGCAAGAGGAATTCTTACATCAGGTTATGGTTGGCGATGGGGAAGAATGCATAGGGGT
ATTGATATAGGAGCACCTACTGGGACTCCAATTGTTGCAGCAGCTCCTGGTATTGTTACTTATGCTGATTGGGACGGCAG
TGGTTACGGTTATCTAGTGGAAATTAAGCATCCCAATGGTAGTCTCACACTTTATGCTCATAACAGCGAGATTTTGGTTA
GAGAAGGTCAAAAAGTGTCTCAGGGTGAGCTAATCGCTAAAATGGGGAGTACAGGCCGTAGCACTGGACCACATTTACAC
TTTGAAATTCATCCTCAGGGGAATGGAGCAGTAGACCCTATGGCCTATCTTCCTTCTAGAATTGCCTCTAATTAG

Upstream 100 bases:

>100_bases
TAACTAAAAGTGATCTGGACATATAAACTTAAGTGACCCAGATCATTCTTAATAAATAAGGCTTAAGACATTTAAACGTT
TTTCAATAGGAGGTCGTTCT

Downstream 100 bases:

>100_bases
CTAGAGTATTGAGAAATCTAGCAGAATAATCTGTGAGCAGTTCGTGAGATAAATTGACGGTAAATTAATGAGGCTTAATG
CCCCATTAATTTACAAATAT

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 824; Mature: 824

Protein sequence:

>824_residues
MKRTFPNQTKSVAQCELHTKASMEQLKQTNVDSTKACSSAAMIGLAAISTTMGTSVMIFPGDDDSAVAAELPQVDKLQSY
SYQARILELNGAGVNSQKSLLLTQLGYLDTQRNSSYEAGVTQSETVLPLGQKLGASFSPVELKPKKLIPGQINKLPSLGS
LGKLQGKKALGNDFKLFEKFKTGINPIQEQKKPPAKILVESKYEEFVSEPVHKPFDLSKKKLLEKNISQKSENLVVPKTS
LEIASPKLNNNSDTKQVAENQTDISQESIETEGRKLEAVVIDSEITSTQVSLMYKVRFGDTLSLIANEHNVSVGLLAKFN
QIQDPDRIEVAKLLKIPQQLPSQSLTLTSYRGGNSTHLESNSSEKQEFVQPTLETTNNHFDFPEAKTSIIESDAPSYNRL
NTSEPLASIKDSSHLISSPQATDQDYQIDHKSKEFITSRQSVNTYSPKTPLVNGKVWPTNLTSKVSGSNSSTHLENQIHL
SNKQPVQLLLMDRDIQDRELTITDNQENPYTNRLRSEIDRLRQEYNDQKDFEQSQLTNLESINTSVPEALSSENNLSVND
QFPIDQNFNNGSFKPTEKREISNPTTRQWPEEIAANGLERKNTAIVLVGSMEEDEIIESQESSLIPTAPETYIPVGSVVE
DEISESQESSRMAAAPETYNPEQILNNPSIGKMVSPDLPPLGKPDSYLPGGSMQFTGYTWPARGILTSGYGWRWGRMHRG
IDIGAPTGTPIVAAAPGIVTYADWDGSGYGYLVEIKHPNGSLTLYAHNSEILVREGQKVSQGELIAKMGSTGRSTGPHLH
FEIHPQGNGAVDPMAYLPSRIASN

Sequences:

>Translated_824_residues
MKRTFPNQTKSVAQCELHTKASMEQLKQTNVDSTKACSSAAMIGLAAISTTMGTSVMIFPGDDDSAVAAELPQVDKLQSY
SYQARILELNGAGVNSQKSLLLTQLGYLDTQRNSSYEAGVTQSETVLPLGQKLGASFSPVELKPKKLIPGQINKLPSLGS
LGKLQGKKALGNDFKLFEKFKTGINPIQEQKKPPAKILVESKYEEFVSEPVHKPFDLSKKKLLEKNISQKSENLVVPKTS
LEIASPKLNNNSDTKQVAENQTDISQESIETEGRKLEAVVIDSEITSTQVSLMYKVRFGDTLSLIANEHNVSVGLLAKFN
QIQDPDRIEVAKLLKIPQQLPSQSLTLTSYRGGNSTHLESNSSEKQEFVQPTLETTNNHFDFPEAKTSIIESDAPSYNRL
NTSEPLASIKDSSHLISSPQATDQDYQIDHKSKEFITSRQSVNTYSPKTPLVNGKVWPTNLTSKVSGSNSSTHLENQIHL
SNKQPVQLLLMDRDIQDRELTITDNQENPYTNRLRSEIDRLRQEYNDQKDFEQSQLTNLESINTSVPEALSSENNLSVND
QFPIDQNFNNGSFKPTEKREISNPTTRQWPEEIAANGLERKNTAIVLVGSMEEDEIIESQESSLIPTAPETYIPVGSVVE
DEISESQESSRMAAAPETYNPEQILNNPSIGKMVSPDLPPLGKPDSYLPGGSMQFTGYTWPARGILTSGYGWRWGRMHRG
IDIGAPTGTPIVAAAPGIVTYADWDGSGYGYLVEIKHPNGSLTLYAHNSEILVREGQKVSQGELIAKMGSTGRSTGPHLH
FEIHPQGNGAVDPMAYLPSRIASN
>Mature_824_residues
MKRTFPNQTKSVAQCELHTKASMEQLKQTNVDSTKACSSAAMIGLAAISTTMGTSVMIFPGDDDSAVAAELPQVDKLQSY
SYQARILELNGAGVNSQKSLLLTQLGYLDTQRNSSYEAGVTQSETVLPLGQKLGASFSPVELKPKKLIPGQINKLPSLGS
LGKLQGKKALGNDFKLFEKFKTGINPIQEQKKPPAKILVESKYEEFVSEPVHKPFDLSKKKLLEKNISQKSENLVVPKTS
LEIASPKLNNNSDTKQVAENQTDISQESIETEGRKLEAVVIDSEITSTQVSLMYKVRFGDTLSLIANEHNVSVGLLAKFN
QIQDPDRIEVAKLLKIPQQLPSQSLTLTSYRGGNSTHLESNSSEKQEFVQPTLETTNNHFDFPEAKTSIIESDAPSYNRL
NTSEPLASIKDSSHLISSPQATDQDYQIDHKSKEFITSRQSVNTYSPKTPLVNGKVWPTNLTSKVSGSNSSTHLENQIHL
SNKQPVQLLLMDRDIQDRELTITDNQENPYTNRLRSEIDRLRQEYNDQKDFEQSQLTNLESINTSVPEALSSENNLSVND
QFPIDQNFNNGSFKPTEKREISNPTTRQWPEEIAANGLERKNTAIVLVGSMEEDEIIESQESSLIPTAPETYIPVGSVVE
DEISESQESSRMAAAPETYNPEQILNNPSIGKMVSPDLPPLGKPDSYLPGGSMQFTGYTWPARGILTSGYGWRWGRMHRG
IDIGAPTGTPIVAAAPGIVTYADWDGSGYGYLVEIKHPNGSLTLYAHNSEILVREGQKVSQGELIAKMGSTGRSTGPHLH
FEIHPQGNGAVDPMAYLPSRIASN

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=45.5284552845528, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081989, Length=102, Percent_Identity=47.0588235294118, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI87082174, Length=138, Percent_Identity=42.7536231884058, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI87082297, Length=124, Percent_Identity=41.1290322580645, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 90704; Mature: 90704

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTFPNQTKSVAQCELHTKASMEQLKQTNVDSTKACSSAAMIGLAAISTTMGTSVMIFP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE
GDDDSAVAAELPQVDKLQSYSYQARILELNGAGVNSQKSLLLTQLGYLDTQRNSSYEAGV
CCCCCHHHHCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
TQSETVLPLGQKLGASFSPVELKPKKLIPGQINKLPSLGSLGKLQGKKALGNDFKLFEKF
CCCCEECCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHCCCHHCCCHHHHHHHH
KTGINPIQEQKKPPAKILVESKYEEFVSEPVHKPFDLSKKKLLEKNISQKSENLVVPKTS
HHCCCHHHHHCCCCHHEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCC
LEIASPKLNNNSDTKQVAENQTDISQESIETEGRKLEAVVIDSEITSTQVSLMYKVRFGD
CEECCCCCCCCCHHHHHHHCHHHCHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEECCC
TLSLIANEHNVSVGLLAKFNQIQDPDRIEVAKLLKIPQQLPSQSLTLTSYRGGNSTHLES
EEEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
NSSEKQEFVQPTLETTNNHFDFPEAKTSIIESDAPSYNRLNTSEPLASIKDSSHLISSPQ
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
ATDQDYQIDHKSKEFITSRQSVNTYSPKTPLVNGKVWPTNLTSKVSGSNSSTHLENQIHL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
SNKQPVQLLLMDRDIQDRELTITDNQENPYTNRLRSEIDRLRQEYNDQKDFEQSQLTNLE
CCCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SINTSVPEALSSENNLSVNDQFPIDQNFNNGSFKPTEKREISNPTTRQWPEEIAANGLER
HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCHHHHHHCCCCC
KNTAIVLVGSMEEDEIIESQESSLIPTAPETYIPVGSVVEDEISESQESSRMAAAPETYN
CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCC
PEQILNNPSIGKMVSPDLPPLGKPDSYLPGGSMQFTGYTWPARGILTSGYGWRWGRMHRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHHCCC
IDIGAPTGTPIVAAAPGIVTYADWDGSGYGYLVEIKHPNGSLTLYAHNSEILVREGQKVS
EECCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCEEEEECCCCCC
QGELIAKMGSTGRSTGPHLHFEIHPQGNGAVDPMAYLPSRIASN
CCHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKRTFPNQTKSVAQCELHTKASMEQLKQTNVDSTKACSSAAMIGLAAISTTMGTSVMIFP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE
GDDDSAVAAELPQVDKLQSYSYQARILELNGAGVNSQKSLLLTQLGYLDTQRNSSYEAGV
CCCCCHHHHCCCCHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
TQSETVLPLGQKLGASFSPVELKPKKLIPGQINKLPSLGSLGKLQGKKALGNDFKLFEKF
CCCCEECCCHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHCCCHHCCCHHHHHHHH
KTGINPIQEQKKPPAKILVESKYEEFVSEPVHKPFDLSKKKLLEKNISQKSENLVVPKTS
HHCCCHHHHHCCCCHHEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEECCCC
LEIASPKLNNNSDTKQVAENQTDISQESIETEGRKLEAVVIDSEITSTQVSLMYKVRFGD
CEECCCCCCCCCHHHHHHHCHHHCHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEEECCC
TLSLIANEHNVSVGLLAKFNQIQDPDRIEVAKLLKIPQQLPSQSLTLTSYRGGNSTHLES
EEEEEECCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
NSSEKQEFVQPTLETTNNHFDFPEAKTSIIESDAPSYNRLNTSEPLASIKDSSHLISSPQ
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCHHCCCCC
ATDQDYQIDHKSKEFITSRQSVNTYSPKTPLVNGKVWPTNLTSKVSGSNSSTHLENQIHL
CCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEEE
SNKQPVQLLLMDRDIQDRELTITDNQENPYTNRLRSEIDRLRQEYNDQKDFEQSQLTNLE
CCCCCEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
SINTSVPEALSSENNLSVNDQFPIDQNFNNGSFKPTEKREISNPTTRQWPEEIAANGLER
HHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHCCHHHHHHCCCCC
KNTAIVLVGSMEEDEIIESQESSLIPTAPETYIPVGSVVEDEISESQESSRMAAAPETYN
CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEECCCCCCC
PEQILNNPSIGKMVSPDLPPLGKPDSYLPGGSMQFTGYTWPARGILTSGYGWRWGRMHRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCHHHHCCC
IDIGAPTGTPIVAAAPGIVTYADWDGSGYGYLVEIKHPNGSLTLYAHNSEILVREGQKVS
EECCCCCCCCEEEECCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCEEEEECCCCCC
QGELIAKMGSTGRSTGPHLHFEIHPQGNGAVDPMAYLPSRIASN
CCHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]