| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113474043
Identifier: 113474043
GI number: 113474043
Start: 197814
End: 198488
Strand: Direct
Name: 113474043
Synonym: Tery_0136
Alternate gene names: NA
Gene position: 197814-198488 (Clockwise)
Preceding gene: 113474042
Following gene: 113474044
Centisome position: 2.55
GC content: 33.78
Gene sequence:
>675_bases ATGTCATATTTCCAATTTCAACAACTAGAAAATTTAGCCACTAAAGGAGAATACACAGCCCATTTTTTATCTGTAAATGA AAGTAAAACTATACCAAATCGTAGCTTAGGACATTCACAAGCAAAATCCCTAGTTTTAAGAGATCAAGTTGAAGCTTGGA TGGGAGAAATTAGCCCTGGTACACACTTACAAATAAATGTTAAACAAGATATAGATTTAATCAGTCTTCAATATTATTAT GGAGATAGTAACCCTTATCGTTCTACTAATGTTGGATTTGGAATTAGTTACACTTTACCAATTATTGTAGCTATTCTTTC ATCCCCACCAGAAACTTTAATTATAATAGAAAATCCTGAGGCACATCTTCATCCGAAAGGTCAAGCAAAAATGGGAGAAT TATTAGCTCTTGCTGCTAGTTGTGGAATGCAAATTGTAGTTGAAACTCACAGCGACCATGTTTTAAATGGAATTAGATTA ATAGTTTATAGAGAAAAAGTTGACCCTAAAAAAGTTCAATTACACTATTTTGACAGCCAAAAACGAGGAAGAGAATTTAT CACTGAAGTTATATCCCCACAGATAGATCGAAACGGACGGATCGATAAATGGCCAGAAGGTTTTTTTGATGAGTGGGATA ATAGTTTAGAAGCTCTTTTGGAACCCAGGGAATAA
Upstream 100 bases:
>100_bases CTCGCCATCTGTTGCTTTTAATATTTATAAATCCAGTCTTTTTAATAAAAAAATTCACTATCTGCAAGCTGAATGTTTAG GTCCTCACTTATTTTTATAA
Downstream 100 bases:
>100_bases TAAATATAGATTTAGAAATGGCGCTTAATGAACTTTCTCTACAGACTCCTATTGCTGATATTTCCACAGCGCAAAAATTA ATGTCAGAGTTAATTCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MSYFQFQQLENLATKGEYTAHFLSVNESKTIPNRSLGHSQAKSLVLRDQVEAWMGEISPGTHLQINVKQDIDLISLQYYY GDSNPYRSTNVGFGISYTLPIIVAILSSPPETLIIIENPEAHLHPKGQAKMGELLALAASCGMQIVVETHSDHVLNGIRL IVYREKVDPKKVQLHYFDSQKRGREFITEVISPQIDRNGRIDKWPEGFFDEWDNSLEALLEPRE
Sequences:
>Translated_224_residues MSYFQFQQLENLATKGEYTAHFLSVNESKTIPNRSLGHSQAKSLVLRDQVEAWMGEISPGTHLQINVKQDIDLISLQYYY GDSNPYRSTNVGFGISYTLPIIVAILSSPPETLIIIENPEAHLHPKGQAKMGELLALAASCGMQIVVETHSDHVLNGIRL IVYREKVDPKKVQLHYFDSQKRGREFITEVISPQIDRNGRIDKWPEGFFDEWDNSLEALLEPRE >Mature_223_residues SYFQFQQLENLATKGEYTAHFLSVNESKTIPNRSLGHSQAKSLVLRDQVEAWMGEISPGTHLQINVKQDIDLISLQYYYG DSNPYRSTNVGFGISYTLPIIVAILSSPPETLIIIENPEAHLHPKGQAKMGELLALAASCGMQIVVETHSDHVLNGIRLI VYREKVDPKKVQLHYFDSQKRGREFITEVISPQIDRNGRIDKWPEGFFDEWDNSLEALLEPRE
Specific function: Unknown
COG id: COG4938
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25468; Mature: 25337
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYFQFQQLENLATKGEYTAHFLSVNESKTIPNRSLGHSQAKSLVLRDQVEAWMGEISPG CCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC THLQINVKQDIDLISLQYYYGDSNPYRSTNVGFGISYTLPIIVAILSSPPETLIIIENPE CEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC AHLHPKGQAKMGELLALAASCGMQIVVETHSDHVLNGIRLIVYREKVDPKKVQLHYFDSQ CCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCEEEEEEECCCCCEEEEEEEECCC KRGREFITEVISPQIDRNGRIDKWPEGFFDEWDNSLEALLEPRE HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC >Mature Secondary Structure SYFQFQQLENLATKGEYTAHFLSVNESKTIPNRSLGHSQAKSLVLRDQVEAWMGEISPG CCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC THLQINVKQDIDLISLQYYYGDSNPYRSTNVGFGISYTLPIIVAILSSPPETLIIIENPE CEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC AHLHPKGQAKMGELLALAASCGMQIVVETHSDHVLNGIRLIVYREKVDPKKVQLHYFDSQ CCCCCCCCHHHHHHHHHHHHCCEEEEEEECCCHHHCCEEEEEEECCCCCEEEEEEEECCC KRGREFITEVISPQIDRNGRIDKWPEGFFDEWDNSLEALLEPRE HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA