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The map label for this gene is ygcF [H]

Identifier: 113474000

GI number: 113474000

Start: 109771

End: 110394

Strand: Reverse

Name: ygcF [H]

Synonym: Tery_0080

Alternate gene names: 113474000

Gene position: 110394-109771 (Counterclockwise)

Preceding gene: 113474001

Following gene: 113473999

Centisome position: 1.42

GC content: 34.29

Gene sequence:

>624_bases
ATGACAGAAAATTTAATTATTCCTATCCATGAAACATTCCAAAAAACTATTCAAGGAGAAGGTTATTGGGCAGGTACACC
AGTAGATTTTATTCGTCTTGCAGGTTGCCCAGTAGGTTGTCATTATTGTGATACTGGTTATGCAGATGGAGGCATTAGTT
TACCTCGTCAAATTCAAACTTTGGATAAGTTAATTAATGAGTTATTTTCTCCTAGAGTTGTTATTTCTGGTGGCGAACCT
TTTATTCATAAACAACTACCAGCTTTAATAAACAGAATAGAAGCGACAGGTAGACAAGTTTCTATTGAAACCTCCGGTTG
CTACTGGCAAAATATTTCCCCTAACGCTTGGGTAACTCTTAGCCCTAAAGAACACATTAGTCATAAATATCCAATTGTCC
CGTCAATGTGGACAAGAGCTTCAGAAATCAAATTGGTTATAGAAACAGGTAAAGAATTAGAATTTTATAGTAAGATTTTA
TTATTAAAGAATCAGACTCCTGTTTTCTTACAACCAGAGTGGTATAACCGTGATTTCACTCTACCATTAGTCCAAAAATT
ACTTCAGGAATATCCTCATTGCCGACTATCTATACAATTACACAAATATTTAGGCATAAAATAA

Upstream 100 bases:

>100_bases
CCAAGGTTAATGACAACTTATATTTATTTTTTTGCTTGTTCTCTGCTGCCTATCTTCCCTACTCTCTAATTCCTACTCCC
TAGTTCTTAAAATCTTAAAA

Downstream 100 bases:

>100_bases
TTAAATAATCATGAGCATGAGACTGAAAAAATGGTATAATTAGAAAATGCTGCCTATTGGGACAATAGACAGCGATTTTA
GAACTGTAGATGAAAGATAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 206

Protein sequence:

>207_residues
MTENLIIPIHETFQKTIQGEGYWAGTPVDFIRLAGCPVGCHYCDTGYADGGISLPRQIQTLDKLINELFSPRVVISGGEP
FIHKQLPALINRIEATGRQVSIETSGCYWQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKIL
LLKNQTPVFLQPEWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK

Sequences:

>Translated_207_residues
MTENLIIPIHETFQKTIQGEGYWAGTPVDFIRLAGCPVGCHYCDTGYADGGISLPRQIQTLDKLINELFSPRVVISGGEP
FIHKQLPALINRIEATGRQVSIETSGCYWQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKIL
LLKNQTPVFLQPEWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK
>Mature_206_residues
TENLIIPIHETFQKTIQGEGYWAGTPVDFIRLAGCPVGCHYCDTGYADGGISLPRQIQTLDKLINELFSPRVVISGGEPF
IHKQLPALINRIEATGRQVSIETSGCYWQNISPNAWVTLSPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILL
LKNQTPVFLQPEWYNRDFTLPLVQKLLQEYPHCRLSIQLHKYLGIK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=223, Percent_Identity=37.219730941704, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23663; Mature: 23532

Theoretical pI: Translated: 7.91; Mature: 7.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENLIIPIHETFQKTIQGEGYWAGTPVDFIRLAGCPVGCHYCDTGYADGGISLPRQIQT
CCCCEEEEHHHHHHHHHCCCCEECCCCHHHHEECCCCCCCEECCCCCCCCCCCCHHHHHH
LDKLINELFSPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGCYWQNISPNAWVTL
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCEEEEE
SPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILLLKNQTPVFLQPEWYNRDFT
CCHHHCCCCCCCCCHHHCCCCCEEEEEECCCCHHHHHHEEEEECCCCEEECCHHCCCCCC
LPLVQKLLQEYPHCRLSIQLHKYLGIK
HHHHHHHHHHCCCEEEEEEEEECCCCC
>Mature Secondary Structure 
TENLIIPIHETFQKTIQGEGYWAGTPVDFIRLAGCPVGCHYCDTGYADGGISLPRQIQT
CCCEEEEHHHHHHHHHCCCCEECCCCHHHHEECCCCCCCEECCCCCCCCCCCCHHHHHH
LDKLINELFSPRVVISGGEPFIHKQLPALINRIEATGRQVSIETSGCYWQNISPNAWVTL
HHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCCCCEEEEE
SPKEHISHKYPIVPSMWTRASEIKLVIETGKELEFYSKILLLKNQTPVFLQPEWYNRDFT
CCHHHCCCCCCCCCHHHCCCCCEEEEEECCCCHHHHHHEEEEECCCCEEECCHHCCCCCC
LPLVQKLLQEYPHCRLSIQLHKYLGIK
HHHHHHHHHHCCCEEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]