| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113473975
Identifier: 113473975
GI number: 113473975
Start: 71367
End: 72836
Strand: Direct
Name: 113473975
Synonym: Tery_0047
Alternate gene names: NA
Gene position: 71367-72836 (Clockwise)
Preceding gene: 113473974
Following gene: 113473977
Centisome position: 0.92
GC content: 36.94
Gene sequence:
>1470_bases ATGCAAATTCTACACCTGAATCTTAAGCTAAAAGGAGATGATTCTGTTGAATTCCGTTTCTATTGGGATAACCTCCTCGA GTTTCAACCTGTTTCGCGCAGTCTAGGAGAAATCTCAGACTTAATTAAAAAGTCAGAAGCTGAGTATTATACTTACCTTC CAGTAGACTATACCCAAACAGGTCAAAATCTCTACAAATGGCTAAATGGAGATAAACGGGATCTAGACAGAGTAATTCAT GATGGTTCATCAGGCGAAGGAATTGTTCTAGCAATTGCAACATTCGAAGGGCTATCACATCTACCTTGGGAACTGCTGCA TAATGATGAAGATTTCTTAGTTAATTCTACACCTGCAATTGTTCCCGTTCGTTGGGTGCCTAATTCAGGAAGCATGAAAG TACTTACTATGGATGATAAACCCAAGAATGAAGCATTGAGTGTGGCATTTATGCCAGCTTCTCCTCACAATAAACCAAAA TTAGACCTTGTAGAAGAGGAAATAAGTATTTTAAAAGCAAGCCAAGAGTCCCCTTTCTCTCTAGAAATAGAATATAGTGG TTGCTTGAATAAGCTGAAGGGTTTGATAAATAAACATGATAAAGGCTTTTTTGATGTGCTTCATCTAGCAGGTCATGCAG AAAACTCTTATTTGATTACAGAAACAGAATCTGGAGAGGCTAAATATAGTAGTGCTGAAGATATTGCTGATGCACTACTA TTTAAAAATCCTCAACTGATTTTCTTGTCGGCTTGTCGGACTGCTTATTCACGGGAGTCATCTATTCCTTCGATGGCTGA AAGTTTAGTAAAAAATGGTTTTAAAGCAGTTTTGGGCTGGGGCGATCGGGTATTAGATACTAGCGCAATAGCGGCTGCAG AAATATTTTATCAGAATTTGTCATCAGGTTCTACAGTAACCCAAGCTTTGGCTCAAACTTATCGGAAACTAATTGAAACA GAGAAAGGTTGGCACTTGTTGCGATTATATGTCAAAGAAAGTTTACCGGGAGCATTAGTAACAGCATCGGCAACACTTGG ACGAATACCACCGCATCGGAAAATAACGACTCTACCTGTAAAAAATTGTTACTATCAGCTGAAACAATGTGTATCTATCC TAAAACAAGATAGTAAAAAAGGTGTCTTGATTTTAGGAAAAAGTAATATTACTTCCTTATTTACTGATGGACTATGTGAA CGTTTACCCAAGTCTAAGATTGTTAAATTGGATCAACAAATTGATGAATACGAATTCGTTAATAAACTAGCGAGTGAATT GGAAAATTCAGAGCAGCGTAATGCACTTCGTAATGCATTTCAACGCGGTGATAAACTTAAATATCCACTAAGAGATTTAT TTAAAAAACGGAATGAAACTGGACTAGAACCTTTAGACATCTCCAAAAATACTCAAACATTTATCCTAACTATCTTTAGT GGTGCGATCGCTACTTATGAAGATAGTTAA
Upstream 100 bases:
>100_bases GTTGTTGCTCCCAATAGTGGAAAACGACTGTTACTTAAAGATGCAACTATAGAGGACATCAAAAAGATTATTGAAGATTA ACTAAGGCAATAGTACAGTT
Downstream 100 bases:
>100_bases TTTGTACAGTTTTATGGGCATCAGAGATACTTCGTGTTACTAATTAAAATATTTATTGTACTTTGATTTATTATTTTTAT CTCGGCTTTTGATGGTTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: GUN4 Domain-Containing Protein; Heterocyst Differentiation Protein HetF; Heterocyst Differentiation Protein; GUN4-Like Protein; GUN4-Like; AAA ATPase; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 489; Mature: 489
Protein sequence:
>489_residues MQILHLNLKLKGDDSVEFRFYWDNLLEFQPVSRSLGEISDLIKKSEAEYYTYLPVDYTQTGQNLYKWLNGDKRDLDRVIH DGSSGEGIVLAIATFEGLSHLPWELLHNDEDFLVNSTPAIVPVRWVPNSGSMKVLTMDDKPKNEALSVAFMPASPHNKPK LDLVEEEISILKASQESPFSLEIEYSGCLNKLKGLINKHDKGFFDVLHLAGHAENSYLITETESGEAKYSSAEDIADALL FKNPQLIFLSACRTAYSRESSIPSMAESLVKNGFKAVLGWGDRVLDTSAIAAAEIFYQNLSSGSTVTQALAQTYRKLIET EKGWHLLRLYVKESLPGALVTASATLGRIPPHRKITTLPVKNCYYQLKQCVSILKQDSKKGVLILGKSNITSLFTDGLCE RLPKSKIVKLDQQIDEYEFVNKLASELENSEQRNALRNAFQRGDKLKYPLRDLFKKRNETGLEPLDISKNTQTFILTIFS GAIATYEDS
Sequences:
>Translated_489_residues MQILHLNLKLKGDDSVEFRFYWDNLLEFQPVSRSLGEISDLIKKSEAEYYTYLPVDYTQTGQNLYKWLNGDKRDLDRVIH DGSSGEGIVLAIATFEGLSHLPWELLHNDEDFLVNSTPAIVPVRWVPNSGSMKVLTMDDKPKNEALSVAFMPASPHNKPK LDLVEEEISILKASQESPFSLEIEYSGCLNKLKGLINKHDKGFFDVLHLAGHAENSYLITETESGEAKYSSAEDIADALL FKNPQLIFLSACRTAYSRESSIPSMAESLVKNGFKAVLGWGDRVLDTSAIAAAEIFYQNLSSGSTVTQALAQTYRKLIET EKGWHLLRLYVKESLPGALVTASATLGRIPPHRKITTLPVKNCYYQLKQCVSILKQDSKKGVLILGKSNITSLFTDGLCE RLPKSKIVKLDQQIDEYEFVNKLASELENSEQRNALRNAFQRGDKLKYPLRDLFKKRNETGLEPLDISKNTQTFILTIFS GAIATYEDS >Mature_489_residues MQILHLNLKLKGDDSVEFRFYWDNLLEFQPVSRSLGEISDLIKKSEAEYYTYLPVDYTQTGQNLYKWLNGDKRDLDRVIH DGSSGEGIVLAIATFEGLSHLPWELLHNDEDFLVNSTPAIVPVRWVPNSGSMKVLTMDDKPKNEALSVAFMPASPHNKPK LDLVEEEISILKASQESPFSLEIEYSGCLNKLKGLINKHDKGFFDVLHLAGHAENSYLITETESGEAKYSSAEDIADALL FKNPQLIFLSACRTAYSRESSIPSMAESLVKNGFKAVLGWGDRVLDTSAIAAAEIFYQNLSSGSTVTQALAQTYRKLIET EKGWHLLRLYVKESLPGALVTASATLGRIPPHRKITTLPVKNCYYQLKQCVSILKQDSKKGVLILGKSNITSLFTDGLCE RLPKSKIVKLDQQIDEYEFVNKLASELENSEQRNALRNAFQRGDKLKYPLRDLFKKRNETGLEPLDISKNTQTFILTIFS GAIATYEDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54915; Mature: 54915
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQILHLNLKLKGDDSVEFRFYWDNLLEFQPVSRSLGEISDLIKKSEAEYYTYLPVDYTQT CEEEEEEEEECCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH GQNLYKWLNGDKRDLDRVIHDGSSGEGIVLAIATFEGLSHLPWELLHNDEDFLVNSTPAI HHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCEEEECCCCE VPVRWVPNSGSMKVLTMDDKPKNEALSVAFMPASPHNKPKLDLVEEEISILKASQESPFS EEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE LEIEYSGCLNKLKGLINKHDKGFFDVLHLAGHAENSYLITETESGEAKYSSAEDIADALL EEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH FKNPQLIFLSACRTAYSRESSIPSMAESLVKNGFKAVLGWGDRVLDTSAIAAAEIFYQNL HCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHC SSGSTVTQALAQTYRKLIETEKGWHLLRLYVKESLPGALVTASATLGRIPPHRKITTLPV CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCEEECCH KNCYYQLKQCVSILKQDSKKGVLILGKSNITSLFTDGLCERLPKSKIVKLDQQIDEYEFV HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH NKLASELENSEQRNALRNAFQRGDKLKYPLRDLFKKRNETGLEPLDISKNTQTFILTIFS HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC GAIATYEDS CCEEECCCC >Mature Secondary Structure MQILHLNLKLKGDDSVEFRFYWDNLLEFQPVSRSLGEISDLIKKSEAEYYTYLPVDYTQT CEEEEEEEEECCCCCEEEEEEECCCHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH GQNLYKWLNGDKRDLDRVIHDGSSGEGIVLAIATFEGLSHLPWELLHNDEDFLVNSTPAI HHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCHHHHCCCCCEEEECCCCE VPVRWVPNSGSMKVLTMDDKPKNEALSVAFMPASPHNKPKLDLVEEEISILKASQESPFS EEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE LEIEYSGCLNKLKGLINKHDKGFFDVLHLAGHAENSYLITETESGEAKYSSAEDIADALL EEEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHH FKNPQLIFLSACRTAYSRESSIPSMAESLVKNGFKAVLGWGDRVLDTSAIAAAEIFYQNL HCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHC SSGSTVTQALAQTYRKLIETEKGWHLLRLYVKESLPGALVTASATLGRIPPHRKITTLPV CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEECHHHCCCCCCCCEEECCH KNCYYQLKQCVSILKQDSKKGVLILGKSNITSLFTDGLCERLPKSKIVKLDQQIDEYEFV HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH NKLASELENSEQRNALRNAFQRGDKLKYPLRDLFKKRNETGLEPLDISKNTQTFILTIFS HHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEC GAIATYEDS CCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA