| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835612
Identifier: 110835612
GI number: 110835612
Start: 3115106
End: 3115672
Strand: Direct
Name: 110835612
Synonym: ABO_2751
Alternate gene names: NA
Gene position: 3115106-3115672 (Clockwise)
Preceding gene: 110835605
Following gene: NA
Centisome position: 99.84
GC content: 48.15
Gene sequence:
>567_bases ATGACCGATTTCACTCTTCACACCGATGAAACAGCCCCCGAAGCTAGCTTGACCTTACTGAAAGAATCGCAAAAAAGCTT TGGTATGATTCCCAATCTGCATGCGGTAATGGCGGAAGCGCCAGGATTGTTAGAGGGGTATCAGAAACTGCACGCTCTTT TTCTAGAAACGAGCTTTACTGACGAAGAAGTGACGGTGGTATGGCAAACTATCAATGTAGAACACGCCTGCCATTACTGC GTCCCAGCCCATACCGGCATTGCCAAATCCATGGACGTTGACGATAGCATTACCAATGCATTGCGCGACAAAACACCGTT GCCCACCGACAAACTCGAAGCCTTGCGCGATTTCACTTTATCGGTGGTCCGTGATCGCGGTGAGGTGGATGAAAAAACGG TGCAGGCTTTCTTGGACGCAGGCTATGAAAAACGGCATATCCTGGAAATCATTCTCGGCGTGTCTCAGAAGGTGATGAGC AATTACACTAACCACCTGGCCAACACTCCAGTTGATAAGCCGTTCAAAAAATTTGAATGGCATGCCGATAGTACGCCATC ATCTTAA
Upstream 100 bases:
>100_bases AATACTATTGCAGGTCATGATCACTATGTTAGGGTGGCACCGTTATTGAGTGGTTGCTCAAATATAAAACCGCTCAATTA ACCGATACAAAGGAGCAATT
Downstream 100 bases:
>100_bases TGCAACGCCTTTACCTGCTTCACCCTTGACCGTGGGGCAGGTAAAGATTTCCCCTCGCTACTCGCGTCCCTCTCATGGCA ATAAGCCTAACAAGCCCATA
Product: alkylhydroperoxidase
Products: NA
Alternate protein names: Carboxymuconolactone Decarboxylase; Alkylhydroperoxidase Like Protein AhpD Family; Alkylhydroperoxidase AhpD Core; Peroxidase-Related; Alkylhydroperoxidase AhpD Domain Protein; Alkylhydroperoxidase AhpD Family Core Domain Protein; 4-Carboxymuconolactone Decarboxylase; Macrophage Infectivity Potentiator Protein; Mip Protein; Ypothetical Protein SMU.; AhpD-Like Alkylhydroperoxidase; Macrophage Infectivity Potentiator-Related Protein; Peroxidase; Alkylhydroperoxidase AhpD Family Protein; Alkylhydroperoxidase-Like Protein AhpD Family; AhpD Family Alkylhydroperoxidase; Alkylhydroperoxidase AhpD Family Core Domain Protein MED; Peroxidase-Like Protein
Number of amino acids: Translated: 188; Mature: 187
Protein sequence:
>188_residues MTDFTLHTDETAPEASLTLLKESQKSFGMIPNLHAVMAEAPGLLEGYQKLHALFLETSFTDEEVTVVWQTINVEHACHYC VPAHTGIAKSMDVDDSITNALRDKTPLPTDKLEALRDFTLSVVRDRGEVDEKTVQAFLDAGYEKRHILEIILGVSQKVMS NYTNHLANTPVDKPFKKFEWHADSTPSS
Sequences:
>Translated_188_residues MTDFTLHTDETAPEASLTLLKESQKSFGMIPNLHAVMAEAPGLLEGYQKLHALFLETSFTDEEVTVVWQTINVEHACHYC VPAHTGIAKSMDVDDSITNALRDKTPLPTDKLEALRDFTLSVVRDRGEVDEKTVQAFLDAGYEKRHILEIILGVSQKVMS NYTNHLANTPVDKPFKKFEWHADSTPSS >Mature_187_residues TDFTLHTDETAPEASLTLLKESQKSFGMIPNLHAVMAEAPGLLEGYQKLHALFLETSFTDEEVTVVWQTINVEHACHYCV PAHTGIAKSMDVDDSITNALRDKTPLPTDKLEALRDFTLSVVRDRGEVDEKTVQAFLDAGYEKRHILEIILGVSQKVMSN YTNHLANTPVDKPFKKFEWHADSTPSS
Specific function: Unknown
COG id: COG2128
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21044; Mature: 20913
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFTLHTDETAPEASLTLLKESQKSFGMIPNLHAVMAEAPGLLEGYQKLHALFLETSFT CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCC DEEVTVVWQTINVEHACHYCVPAHTGIAKSMDVDDSITNALRDKTPLPTDKLEALRDFTL CCEEEEEEEECCHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH SVVRDRGEVDEKTVQAFLDAGYEKRHILEIILGVSQKVMSNYTNHLANTPVDKPFKKFEW HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC HADSTPSS CCCCCCCC >Mature Secondary Structure TDFTLHTDETAPEASLTLLKESQKSFGMIPNLHAVMAEAPGLLEGYQKLHALFLETSFT CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCC DEEVTVVWQTINVEHACHYCVPAHTGIAKSMDVDDSITNALRDKTPLPTDKLEALRDFTL CCEEEEEEEECCHHHHHHHHCCCCCCCHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHH SVVRDRGEVDEKTVQAFLDAGYEKRHILEIILGVSQKVMSNYTNHLANTPVDKPFKKFEW HHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCC HADSTPSS CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA