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The map label for this gene is ycfQ [H]

Identifier: 110835611

GI number: 110835611

Start: 3114337

End: 3114945

Strand: Reverse

Name: ycfQ [H]

Synonym: ABO_2750

Alternate gene names: 110835611

Gene position: 3114945-3114337 (Counterclockwise)

Preceding gene: 110835613

Following gene: 110835610

Centisome position: 99.83

GC content: 48.44

Gene sequence:

>609_bases
ATGCCCAGAGTAGTGGCGTATGATCGACAAGATTGCCTGGAAAAGGCCATGACTCTGTTCTGGCAGAAAGGGTTTCATGG
CACCACGCTCAAAGATATTGAGCACACGCTGAATATGCGCCCGGGTAGTATTTATGCCGCTTTTGGCAATAAAGAGTCGC
TCTACAGCCAGGCGTTGGATCTGTATGCCGGAACTATAGGCAGAGGTTTTCTCGAAAAATTGAAAGAAAAGGGCACTCCT
CTTGAGGGCTTGGCAGATTATGTACATGAACTAGGTAATCTGCGCGACATAAACCCGCCTTCTCGGGCATGTATGCTAGT
AAAAGGTTTATTGGAAACCGGAGATGAAACGCCTGCACTGCAGAGAAAAATTGAAACGCGGTTGGCCGATATGGAACGTA
TTTTTCGGCAAGCTTTTACTGAGGCACATGAAGCAGGGCAAATTCGAGATCCGGATCTTTCTGCTCATCAGCCGGATCGT
TTAGCACGAAGACTGCAGTGTGAAGTGATGGGGTTACGTGCATTTGCCCAACGATCCGGTGATCAGGAAGAGTTGAAGTT
GTTAGCCGAGGATATTGCGCAGAGCCTGCTTTCCATGCAGGCGGAATAA

Upstream 100 bases:

>100_bases
GTGCCACCCTAACATAGTGATCATGACCTGCAATAGTATTTTGAGTGATCACTCAGCTATTGTTAGACTCTTTTATTATC
TGTGTGAAGGGGGAGCATCT

Downstream 100 bases:

>100_bases
GCTTTCAGCGGGTTGCCGAAACGGTATATGTGTTGATTGCACTTCTAATGAATCTGGCTTGTTGCCGTGCCATCATAAGA
CCGAACGAGTTTTTAATGTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 201

Protein sequence:

>202_residues
MPRVVAYDRQDCLEKAMTLFWQKGFHGTTLKDIEHTLNMRPGSIYAAFGNKESLYSQALDLYAGTIGRGFLEKLKEKGTP
LEGLADYVHELGNLRDINPPSRACMLVKGLLETGDETPALQRKIETRLADMERIFRQAFTEAHEAGQIRDPDLSAHQPDR
LARRLQCEVMGLRAFAQRSGDQEELKLLAEDIAQSLLSMQAE

Sequences:

>Translated_202_residues
MPRVVAYDRQDCLEKAMTLFWQKGFHGTTLKDIEHTLNMRPGSIYAAFGNKESLYSQALDLYAGTIGRGFLEKLKEKGTP
LEGLADYVHELGNLRDINPPSRACMLVKGLLETGDETPALQRKIETRLADMERIFRQAFTEAHEAGQIRDPDLSAHQPDR
LARRLQCEVMGLRAFAQRSGDQEELKLLAEDIAQSLLSMQAE
>Mature_201_residues
PRVVAYDRQDCLEKAMTLFWQKGFHGTTLKDIEHTLNMRPGSIYAAFGNKESLYSQALDLYAGTIGRGFLEKLKEKGTPL
EGLADYVHELGNLRDINPPSRACMLVKGLLETGDETPALQRKIETRLADMERIFRQAFTEAHEAGQIRDPDLSAHQPDRL
ARRLQCEVMGLRAFAQRSGDQEELKLLAEDIAQSLLSMQAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=189, Percent_Identity=26.984126984127, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22777; Mature: 22646

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRVVAYDRQDCLEKAMTLFWQKGFHGTTLKDIEHTLNMRPGSIYAAFGNKESLYSQALD
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
LYAGTIGRGFLEKLKEKGTPLEGLADYVHELGNLRDINPPSRACMLVKGLLETGDETPAL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
QRKIETRLADMERIFRQAFTEAHEAGQIRDPDLSAHQPDRLARRLQCEVMGLRAFAQRSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DQEELKLLAEDIAQSLLSMQAE
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PRVVAYDRQDCLEKAMTLFWQKGFHGTTLKDIEHTLNMRPGSIYAAFGNKESLYSQALD
CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHH
LYAGTIGRGFLEKLKEKGTPLEGLADYVHELGNLRDINPPSRACMLVKGLLETGDETPAL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHH
QRKIETRLADMERIFRQAFTEAHEAGQIRDPDLSAHQPDRLARRLQCEVMGLRAFAQRSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DQEELKLLAEDIAQSLLSMQAE
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]