| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110835601
Identifier: 110835601
GI number: 110835601
Start: 3099011
End: 3100312
Strand: Direct
Name: 110835601
Synonym: ABO_2740
Alternate gene names: NA
Gene position: 3099011-3100312 (Clockwise)
Preceding gene: 110835600
Following gene: 110835603
Centisome position: 99.32
GC content: 50.31
Gene sequence:
>1302_bases ATGACCATCTTGAAACCATTGCGGCTCGCTGTTGTGGCTAGCCTTCTGGTCGGCTGCGCCGCACCTCATCAACAACTCGC TCAAACCAACGCTGCTCAGAACGCCTTGTATGCCGAGGTTGTTGATCCTCTGGACCACTGGCCCACACAAACACAATTTG ATATAAGCCTCCTTGAGTCGGATTTCTTCACTCACTACCAGCAGGACTACGCCAACGGTGAAGTGTATGACGATTTCCCC AGTCTGACTGAATGCGCCTTGCCGCAGGAACGGGCTTTAGAGATTGCCAGACTCAGCCCCGAGATGATTAATCCACCCAG TAAAAGCGCTACGATTGAAAGCCTTTCCACTGTTGGCTATGAACAGATTAGCGTTCGCTCAACTCCAGCCGGATGTCAGG CGTTAAGCGCCGTTGAGATGCACACCATCCCGAACATGGTGGTGGAACTGAAACAATTGCCCGATGCCTTCCGGCACCCG GTTTATATTCATGCGGTTTACACCAACCACATCAAGAATCGAATCAATATCAATGGCTCATGGAGAAAAAGCGACCTGGG TAAGTCTCGCATTACCGTAAAACGCTACCGTCGCGATAGTGGCCTAAACGATTTTCCTGTTATTAAAACCACTTGGCAAA AAACCGATCGGCTCAAGAAAGGCGATATCGATACCTCCCGGTTTATCGATAAACCCATGTATGTCGCTCACTATGTTGCC TCAACTACCCAAGCCCCGTACCAAGGCATTACTCTGATACGGCAGACTGTTGTCAATAAAACCGGCAATAGCATCAGAAT GCGGTGGCAAGAAGAGGACCGCTTCATGAACCGCACCTGGACGCATAACGGTACCGTTCTTACCCAGAGAGATGGTGTTC AGCATGGTGTTTTTATTGTTCCCAGCCATACCGGTGAACAAAGTGTGTACTGTAAAGACATGGGCCAGTCGGTGGATTAT TTCAGAATTGAAAATACCTACGATTGCGTTAGCGCCACCGAAAGCAGCTTCGGCGAAGAAGGGGTGTATATGGATCCCTT GTTGAAAATTCGCAATGGCTTTCCCTCTCCAGCCGCCACCATAGCTAAGCCCACAGCGCCGAGCCAACCGGCAAGTACCT TTCCTGCAGCAAACACACCCGCCAGTGTGGTTTCCTCTACTACATCGGAGTGCGCTAAAGCCTACGCTGCCAAAGAAGCC TGTGGCCGTATTCCAGGTGACCCCTTTGGCATCGCAACCAAACTATGCATCAGTACTACCAAGAAAAAATTCGGCGGACT CAACTGTCCGATACCGCTTTAA
Upstream 100 bases:
>100_bases CATCCCCCATATAGGATATCCGCTCAGTAGCTGCCAACTGCTACATTAGCAACGGTTTGATCGGGGGTTTTACGTTATAA ATAATGATCGGGGGAAGGTC
Downstream 100 bases:
>100_bases CCTTCCCTGCCCCTTTATTTGACCAATGGCCAACTGGCCGTTGGTCAATCCTCTTCGTTAATCCCCTCGGCATATTCGGT CCCGGCCACCGATTATCTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MTILKPLRLAVVASLLVGCAAPHQQLAQTNAAQNALYAEVVDPLDHWPTQTQFDISLLESDFFTHYQQDYANGEVYDDFP SLTECALPQERALEIARLSPEMINPPSKSATIESLSTVGYEQISVRSTPAGCQALSAVEMHTIPNMVVELKQLPDAFRHP VYIHAVYTNHIKNRININGSWRKSDLGKSRITVKRYRRDSGLNDFPVIKTTWQKTDRLKKGDIDTSRFIDKPMYVAHYVA STTQAPYQGITLIRQTVVNKTGNSIRMRWQEEDRFMNRTWTHNGTVLTQRDGVQHGVFIVPSHTGEQSVYCKDMGQSVDY FRIENTYDCVSATESSFGEEGVYMDPLLKIRNGFPSPAATIAKPTAPSQPASTFPAANTPASVVSSTTSECAKAYAAKEA CGRIPGDPFGIATKLCISTTKKKFGGLNCPIPL
Sequences:
>Translated_433_residues MTILKPLRLAVVASLLVGCAAPHQQLAQTNAAQNALYAEVVDPLDHWPTQTQFDISLLESDFFTHYQQDYANGEVYDDFP SLTECALPQERALEIARLSPEMINPPSKSATIESLSTVGYEQISVRSTPAGCQALSAVEMHTIPNMVVELKQLPDAFRHP VYIHAVYTNHIKNRININGSWRKSDLGKSRITVKRYRRDSGLNDFPVIKTTWQKTDRLKKGDIDTSRFIDKPMYVAHYVA STTQAPYQGITLIRQTVVNKTGNSIRMRWQEEDRFMNRTWTHNGTVLTQRDGVQHGVFIVPSHTGEQSVYCKDMGQSVDY FRIENTYDCVSATESSFGEEGVYMDPLLKIRNGFPSPAATIAKPTAPSQPASTFPAANTPASVVSSTTSECAKAYAAKEA CGRIPGDPFGIATKLCISTTKKKFGGLNCPIPL >Mature_432_residues TILKPLRLAVVASLLVGCAAPHQQLAQTNAAQNALYAEVVDPLDHWPTQTQFDISLLESDFFTHYQQDYANGEVYDDFPS LTECALPQERALEIARLSPEMINPPSKSATIESLSTVGYEQISVRSTPAGCQALSAVEMHTIPNMVVELKQLPDAFRHPV YIHAVYTNHIKNRININGSWRKSDLGKSRITVKRYRRDSGLNDFPVIKTTWQKTDRLKKGDIDTSRFIDKPMYVAHYVAS TTQAPYQGITLIRQTVVNKTGNSIRMRWQEEDRFMNRTWTHNGTVLTQRDGVQHGVFIVPSHTGEQSVYCKDMGQSVDYF RIENTYDCVSATESSFGEEGVYMDPLLKIRNGFPSPAATIAKPTAPSQPASTFPAANTPASVVSSTTSECAKAYAAKEAC GRIPGDPFGIATKLCISTTKKKFGGLNCPIPL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47987; Mature: 47856
Theoretical pI: Translated: 7.96; Mature: 7.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTILKPLRLAVVASLLVGCAAPHQQLAQTNAAQNALYAEVVDPLDHWPTQTQFDISLLES CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH DFFTHYQQDYANGEVYDDFPSLTECALPQERALEIARLSPEMINPPSKSATIESLSTVGY HHHHHHHHHCCCCCEECCCCCHHHHCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC EQISVRSTPAGCQALSAVEMHTIPNMVVELKQLPDAFRHPVYIHAVYTNHIKNRININGS HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCEEECCCC WRKSDLGKSRITVKRYRRDSGLNDFPVIKTTWQKTDRLKKGDIDTSRFIDKPMYVAHYVA CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCCCCCCHHHHHCCCHHHHHHHH STTQAPYQGITLIRQTVVNKTGNSIRMRWQEEDRFMNRTWTHNGTVLTQRDGVQHGVFIV HCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCEECCCCEEEEECCCCCCCEEEE PSHTGEQSVYCKDMGQSVDYFRIENTYDCVSATESSFGEEGVYMDPLLKIRNGFPSPAAT ECCCCCCCEEHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHH IAKPTAPSQPASTFPAANTPASVVSSTTSECAKAYAAKEACGRIPGDPFGIATKLCISTT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KKKFGGLNCPIPL HHHHCCCCCCCCC >Mature Secondary Structure TILKPLRLAVVASLLVGCAAPHQQLAQTNAAQNALYAEVVDPLDHWPTQTQFDISLLES CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHH DFFTHYQQDYANGEVYDDFPSLTECALPQERALEIARLSPEMINPPSKSATIESLSTVGY HHHHHHHHHCCCCCEECCCCCHHHHCCCHHHHHHHHHCCHHHCCCCCCCHHHHHHHHCCC EQISVRSTPAGCQALSAVEMHTIPNMVVELKQLPDAFRHPVYIHAVYTNHIKNRININGS HHEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHCCEEECCCC WRKSDLGKSRITVKRYRRDSGLNDFPVIKTTWQKTDRLKKGDIDTSRFIDKPMYVAHYVA CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCCCCCCHHHHHCCCHHHHHHHH STTQAPYQGITLIRQTVVNKTGNSIRMRWQEEDRFMNRTWTHNGTVLTQRDGVQHGVFIV HCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHCEECCCCEEEEECCCCCCCEEEE PSHTGEQSVYCKDMGQSVDYFRIENTYDCVSATESSFGEEGVYMDPLLKIRNGFPSPAAT ECCCCCCCEEHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHH IAKPTAPSQPASTFPAANTPASVVSSTTSECAKAYAAKEACGRIPGDPFGIATKLCISTT CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH KKKFGGLNCPIPL HHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA