| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835573
Identifier: 110835573
GI number: 110835573
Start: 3069373
End: 3069945
Strand: Reverse
Name: 110835573
Synonym: ABO_2712
Alternate gene names: NA
Gene position: 3069945-3069373 (Counterclockwise)
Preceding gene: 110835574
Following gene: 110835572
Centisome position: 98.39
GC content: 43.46
Gene sequence:
>573_bases ATGTCAGAATTTTCAGGTTCAGAAGCAGCTGAGTTATTTTCTGACTACTATGAGCTGATTTCCGAAGAGAGTGATCGCGG AGCAGTCATTGTCGCAGCCTCTATATTAGACGAGAGCTTGGGCGAGATTCTGAAGACTTTTTTGCTCCGTCCTTCAACAA AAAAAGATAATTTGCTTGAAGGCGCGTATGCTCCGCTCGGTTCTTTTTCGGCAAAAATTGAGTTGTCTTTCCGTTTGGGA ATTATCCGCAAGCCAATTCGGCAGCAACTAATGCTGTTCAAATCGATAAGAAACGATGTCGCACATCGGCTTTCAGTCGC TAGCTTGCAAGACGAAAAATGTCGCTCAAGGCTCGCTGAAATCCTCAACACTACCCCTGATATTACGCATCAAATGATTA AAATCCTGATCCAAGCAGGTCTCGATATCAGTCATAAAGAACGTGGGGATAGTTTTCTCGATACCTATGGCTGCAGACGG ACGTTTGATCTGCTTTTTTCTATGGTATGTATGGCGACCACTCAAATAGCCAAAACGATCGAGCCAATAGACTGTTTTAT CCAAGAGAGTTAA
Upstream 100 bases:
>100_bases AAAGCAGTGCATCGAGAACTCTATTGCACTTAACAAACGCGTCAATTAGGACGCTCGCAAGCTCGCGCCTATTACGCGGG CGTTAATTCAAAGAGATGTT
Downstream 100 bases:
>100_bases CAAGGCCAGGCACGGCGACGTGTAGCTCCCCCGCTTTAGTGGCCACCTTATCCTAACCAGAGGAGGTGGAAAAATTTTCC GATACAACAGCCTCAGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MSEFSGSEAAELFSDYYELISEESDRGAVIVAASILDESLGEILKTFLLRPSTKKDNLLEGAYAPLGSFSAKIELSFRLG IIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEILNTTPDITHQMIKILIQAGLDISHKERGDSFLDTYGCRR TFDLLFSMVCMATTQIAKTIEPIDCFIQES
Sequences:
>Translated_190_residues MSEFSGSEAAELFSDYYELISEESDRGAVIVAASILDESLGEILKTFLLRPSTKKDNLLEGAYAPLGSFSAKIELSFRLG IIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEILNTTPDITHQMIKILIQAGLDISHKERGDSFLDTYGCRR TFDLLFSMVCMATTQIAKTIEPIDCFIQES >Mature_189_residues SEFSGSEAAELFSDYYELISEESDRGAVIVAASILDESLGEILKTFLLRPSTKKDNLLEGAYAPLGSFSAKIELSFRLGI IRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAEILNTTPDITHQMIKILIQAGLDISHKERGDSFLDTYGCRRT FDLLFSMVCMATTQIAKTIEPIDCFIQES
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21331; Mature: 21200
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEFSGSEAAELFSDYYELISEESDRGAVIVAASILDESLGEILKTFLLRPSTKKDNLLE CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHH GAYAPLGSFSAKIELSFRLGIIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAE HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILNTTPDITHQMIKILIQAGLDISHKERGDSFLDTYGCRRTFDLLFSMVCMATTQIAKTI HHCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EPIDCFIQES HHHHHHHCCC >Mature Secondary Structure SEFSGSEAAELFSDYYELISEESDRGAVIVAASILDESLGEILKTFLLRPSTKKDNLLE CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHH GAYAPLGSFSAKIELSFRLGIIRKPIRQQLMLFKSIRNDVAHRLSVASLQDEKCRSRLAE HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILNTTPDITHQMIKILIQAGLDISHKERGDSFLDTYGCRRTFDLLFSMVCMATTQIAKTI HHCCCCHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EPIDCFIQES HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA