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The map label for this gene is alkS

Identifier: 110835567

GI number: 110835567

Start: 3060396

End: 3063014

Strand: Reverse

Name: alkS

Synonym: ABO_2706

Alternate gene names: 110835567

Gene position: 3063014-3060396 (Counterclockwise)

Preceding gene: 110835572

Following gene: 110835566

Centisome position: 98.17

GC content: 46.43

Gene sequence:

>2619_bases
ATGCTGTGCGATAACTTGGAAAACTGGTGCCTTAGAATGTCTGACCGGATGTGGGCCCGGCAGCGTTTTATTACTCAAGG
GTGCATAGAGCGCGGTCGCCTGAAAGCCTCTGCCGAGTCCGAATCAAAAGTTATTCTTTACCGGGCCCCTTTAGGTTATG
GCAAGTCTGTGCAAGTTGCTTTCGAGGCGGGCACTCAGGGCCGAGAGGAGGGGGGCGTCGCCTATATCAATACGCGATCG
TATCCTGGCTCCGGTGAAATTACGGATTCTTTGTTGGCTGCGTTAATTTTATATCAAATTAAAGGCCGTGAACCCTGGAG
CGTTATTCAAAGTAATGATGACATCATTGAGTCACTTCGAGATACGCTGTGTAATGCTAAAAATCCGATAAAAATTTGCA
TAGATGGCATTGGGGAGGCTGAGCATGGCGTGGGCCTGGTTGAGAATTTAATATGCGAAACCCCCAATAATGTGAAATTT
TATATTGCGCCCAGTAATGCTGGAGCGTTGGCGCGCTTGTCTATGATGGCGGGTGTGGTGACATATGGCGCGCATGACCT
TGTCTTCACAGAAGAGGAAGTATGTGAGTTGCCGGGAATGCATAGCGCCAAGGCTAAAAATGTTATAGAGGCTACTGGTG
GATGGCCCGCACTTGTTGGGCTTATGTGCCACACTTCAAATCCAAACCTCCCCGCTGCGACCTGGCCGGAAACCCGTTCG
TATTTCAGAAACAATCTACTCAACGCGCTGCCAAATAATACACGGGAATTTATTTGCAAAGCCGCAATGCTGGAAGAGAT
CAGCGTTGCCTGCTACGACTACGTATATAAAACAGAAGAGGCCCATAAAGAAATTCCGTTTATTAATGAAAATTATGCGC
TCTTTACCCCCACAGAATCTTCCAGAGAGTGCATGGTTATGCACCCGGTGCTAAGAGAGTATTTGCGTGGTTTGTTTGAT
TCTATTCAGCGAGAGCGTCGCTCATATGTGCTAAAGCGTGTCGCATTTTGGCATTGGCGTAGGGGTGAGTATCTCCATTC
AATCAATGCCGCTCAGGAGGCGAGCGATCACAGCTGGGCTCGAGCGGTAAGCGATAGCATTATCTTAGACGTAGCACTCA
GGCAAGGCGAAATAGAGGTGCTTCGAACATGGTTCGAAAAAGTGCCGGTTCGAACGATAAAAAAAATCGCGTCCTTAAGC
ATCAGCTATGCTTGGATCTTGTATTTCAGCCAGCAAGCTCGGCAAGCAGAAAAAATACTGGCAAGCTCCACGGAGTCCTG
CAGCAGAGGTTTAGACAACCTTGATGAAAAAGGATGGCGGAAGCTGGTCGACGCGGTAGGAAAAGCGACACAGGATCAAT
TTGCGCAAAGCCAAACCCTCTGCCAGCAATGGATTGATACTTTCGGCGAGCGTAACATGGTCGGCAAGGGAGCGGCGCTT
ACGTGCCAAGCATACATTGCTTCCAGTGATCGTCGCTTTGAGGATTTAGAGCAATTATTACACAGGGGAGCGGTAGCCAA
TCAGTCTTCCAATCAACACTACGCTTTTGTTTGGCTTAAAACGGCAGAACTTCAGGCTGAAATATTTAAAGGTGATATCG
CTCATGCAATGAGTATATTACTTGAAGCCAATAAAACAGCAGAGAAGATGGGGGTGTCAAAAACATTTTTAAATAAAATG
CTTGGCTCCCTTGAATTGCAAATTCTGCACGAGAAAAGCCCTAGCCTAATTAGTTATGAGTCTGCGGAAGAGTCATTCAA
CTTCGCATTAAACTATGGTGTTACAGATATTTTATGGGGTTGCACGCAAACGTTCAGTAGTTTCCTGTACCAGCAAGGGT
TAAGAGATAGGGCTATGGCCATATTGGAGCAAACCCGGATAGCTGCCTGCGAAAGAGACCTACCTCGACTTAACATGCTA
GCTAAAATACAGCTGGCTGAGTTTACGCTTATAAACGATGAGGAATTAGAGCCGCCGATACTTCCTGATGAGAGTGAGCT
GACATTTTTGCCAAATCAAAACCAAGCCATTCGCGCACGTATTGCGCTAGTCAATTCAATGTATAGGTTGAGGCTTGGAA
AGCAGTTTGGTGTTGCTGAAAAGTATGCAAAAAAAGCATTACAAAGCGCCAGTGCAATTTCAGACGCTAGAACCAAGATC
GCCGCCCAATATTGCCAGGCATTAGCGGTTTTTGGCCTCGGTTCATCAAAATTAGCGAAGCGCACAATTATTGATGCCGA
CCAGCTTACGGAACATTTAAGCTGTTATTTTACCCGAGACTGGATTAAAGAAGCATTAATGTCGTTTAGCCCCATTGCTC
GGGATCTTTTTGATACGTTGCCAGAAAGCGCAGAGACTAACGCTACAAAAGATCTCGAGGTGAGAAAAGAAGAGGCTGAC
GCCCGCCCTAAACTCACTAATACCCAATCAACCATTACGATAAAGCAAATTTCTCTGTTGAAATGTGTAAGCAGTGGAAT
GACGAACAAAGAGATCGCTGAGCGGCTTCTTATAACAGAGGATACCGTCAAATGGCATCTGAAAAAGATTTTCAGCGAAC
TTAAAGTAACCAACCGGGTTCGGGCAGTGTCTGAAGCTAGGCTACGCGGGCTTCTATAG

Upstream 100 bases:

>100_bases
TACTCCAAAGGGTAGTTTTTGCTCTGTACATAATATCAATATGCATTCATCCCTTAGTACGCAGGTCTTTGGAGGAGATG
CAACAGGGGGTCTTGTTGCC

Downstream 100 bases:

>100_bases
CACCACGAAAATAAAAGAGAAGATGAGCGAGTGCGCAGCAAGTGGCCATTAATTGATTTTTTAATGGCACGTTAAGGCGG
CTATCGACATGGCCTCGGAA

Product: alkB1GHJ regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 872; Mature: 872

Protein sequence:

>872_residues
MLCDNLENWCLRMSDRMWARQRFITQGCIERGRLKASAESESKVILYRAPLGYGKSVQVAFEAGTQGREEGGVAYINTRS
YPGSGEITDSLLAALILYQIKGREPWSVIQSNDDIIESLRDTLCNAKNPIKICIDGIGEAEHGVGLVENLICETPNNVKF
YIAPSNAGALARLSMMAGVVTYGAHDLVFTEEEVCELPGMHSAKAKNVIEATGGWPALVGLMCHTSNPNLPAATWPETRS
YFRNNLLNALPNNTREFICKAAMLEEISVACYDYVYKTEEAHKEIPFINENYALFTPTESSRECMVMHPVLREYLRGLFD
SIQRERRSYVLKRVAFWHWRRGEYLHSINAAQEASDHSWARAVSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLS
ISYAWILYFSQQARQAEKILASSTESCSRGLDNLDEKGWRKLVDAVGKATQDQFAQSQTLCQQWIDTFGERNMVGKGAAL
TCQAYIASSDRRFEDLEQLLHRGAVANQSSNQHYAFVWLKTAELQAEIFKGDIAHAMSILLEANKTAEKMGVSKTFLNKM
LGSLELQILHEKSPSLISYESAEESFNFALNYGVTDILWGCTQTFSSFLYQQGLRDRAMAILEQTRIAACERDLPRLNML
AKIQLAEFTLINDEELEPPILPDESELTFLPNQNQAIRARIALVNSMYRLRLGKQFGVAEKYAKKALQSASAISDARTKI
AAQYCQALAVFGLGSSKLAKRTIIDADQLTEHLSCYFTRDWIKEALMSFSPIARDLFDTLPESAETNATKDLEVRKEEAD
ARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLKKIFSELKVTNRVRAVSEARLRGLL

Sequences:

>Translated_872_residues
MLCDNLENWCLRMSDRMWARQRFITQGCIERGRLKASAESESKVILYRAPLGYGKSVQVAFEAGTQGREEGGVAYINTRS
YPGSGEITDSLLAALILYQIKGREPWSVIQSNDDIIESLRDTLCNAKNPIKICIDGIGEAEHGVGLVENLICETPNNVKF
YIAPSNAGALARLSMMAGVVTYGAHDLVFTEEEVCELPGMHSAKAKNVIEATGGWPALVGLMCHTSNPNLPAATWPETRS
YFRNNLLNALPNNTREFICKAAMLEEISVACYDYVYKTEEAHKEIPFINENYALFTPTESSRECMVMHPVLREYLRGLFD
SIQRERRSYVLKRVAFWHWRRGEYLHSINAAQEASDHSWARAVSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLS
ISYAWILYFSQQARQAEKILASSTESCSRGLDNLDEKGWRKLVDAVGKATQDQFAQSQTLCQQWIDTFGERNMVGKGAAL
TCQAYIASSDRRFEDLEQLLHRGAVANQSSNQHYAFVWLKTAELQAEIFKGDIAHAMSILLEANKTAEKMGVSKTFLNKM
LGSLELQILHEKSPSLISYESAEESFNFALNYGVTDILWGCTQTFSSFLYQQGLRDRAMAILEQTRIAACERDLPRLNML
AKIQLAEFTLINDEELEPPILPDESELTFLPNQNQAIRARIALVNSMYRLRLGKQFGVAEKYAKKALQSASAISDARTKI
AAQYCQALAVFGLGSSKLAKRTIIDADQLTEHLSCYFTRDWIKEALMSFSPIARDLFDTLPESAETNATKDLEVRKEEAD
ARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLKKIFSELKVTNRVRAVSEARLRGLL
>Mature_872_residues
MLCDNLENWCLRMSDRMWARQRFITQGCIERGRLKASAESESKVILYRAPLGYGKSVQVAFEAGTQGREEGGVAYINTRS
YPGSGEITDSLLAALILYQIKGREPWSVIQSNDDIIESLRDTLCNAKNPIKICIDGIGEAEHGVGLVENLICETPNNVKF
YIAPSNAGALARLSMMAGVVTYGAHDLVFTEEEVCELPGMHSAKAKNVIEATGGWPALVGLMCHTSNPNLPAATWPETRS
YFRNNLLNALPNNTREFICKAAMLEEISVACYDYVYKTEEAHKEIPFINENYALFTPTESSRECMVMHPVLREYLRGLFD
SIQRERRSYVLKRVAFWHWRRGEYLHSINAAQEASDHSWARAVSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLS
ISYAWILYFSQQARQAEKILASSTESCSRGLDNLDEKGWRKLVDAVGKATQDQFAQSQTLCQQWIDTFGERNMVGKGAAL
TCQAYIASSDRRFEDLEQLLHRGAVANQSSNQHYAFVWLKTAELQAEIFKGDIAHAMSILLEANKTAEKMGVSKTFLNKM
LGSLELQILHEKSPSLISYESAEESFNFALNYGVTDILWGCTQTFSSFLYQQGLRDRAMAILEQTRIAACERDLPRLNML
AKIQLAEFTLINDEELEPPILPDESELTFLPNQNQAIRARIALVNSMYRLRLGKQFGVAEKYAKKALQSASAISDARTKI
AAQYCQALAVFGLGSSKLAKRTIIDADQLTEHLSCYFTRDWIKEALMSFSPIARDLFDTLPESAETNATKDLEVRKEEAD
ARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLKKIFSELKVTNRVRAVSEARLRGLL

Specific function: This protein activates the expression of AlkB1 in the presence of alkanes

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ALKS_ALCBS (Q0VKZ4)

Other databases:

- EMBL:   AJ295164
- EMBL:   AM286690
- RefSeq:   YP_694426.1
- ProteinModelPortal:   Q0VKZ4
- SMR:   Q0VKZ4
- STRING:   Q0VKZ4
- GeneID:   4213403
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2706
- NMPDR:   fig|393595.12.peg.2716
- eggNOG:   COG2197
- HOGENOM:   HBG113347
- OMA:   QSASAIS
- ProtClustDB:   CLSK956607
- BioCyc:   ABOR393595:ABO_2706-MONOMER
- GO:   GO:0005622
- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421

Pfam domain/function: PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector

EC number: NA

Molecular weight: Translated: 98111; Mature: 98111

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCDNLENWCLRMSDRMWARQRFITQGCIERGRLKASAESESKVILYRAPLGYGKSVQVA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEE
FEAGTQGREEGGVAYINTRSYPGSGEITDSLLAALILYQIKGREPWSVIQSNDDIIESLR
EECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHH
DTLCNAKNPIKICIDGIGEAEHGVGLVENLICETPNNVKFYIAPSNAGALARLSMMAGVV
HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH
TYGAHDLVFTEEEVCELPGMHSAKAKNVIEATGGWPALVGLMCHTSNPNLPAATWPETRS
HCCCCCEEECHHHHHHCCCCCCHHHCCHHHCCCCHHHHHHHHEECCCCCCCCCCCHHHHH
YFRNNLLNALPNNTREFICKAAMLEEISVACYDYVYKTEEAHKEIPFINENYALFTPTES
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEECCCEEEECCCCC
SRECMVMHPVLREYLRGLFDSIQRERRSYVLKRVAFWHWRRGEYLHSINAAQEASDHSWA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
RAVSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLSISYAWILYFSQQARQAEKIL
HHHHHHHHEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSTESCSRGLDNLDEKGWRKLVDAVGKATQDQFAQSQTLCQQWIDTFGERNMVGKGAAL
HCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
TCQAYIASSDRRFEDLEQLLHRGAVANQSSNQHYAFVWLKTAELQAEIFKGDIAHAMSIL
EEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHH
LEANKTAEKMGVSKTFLNKMLGSLELQILHEKSPSLISYESAEESFNFALNYGVTDILWG
HHCCCHHHHHCHHHHHHHHHHHHHEEEEEECCCCCEEEECCHHHCCCEEEECCHHHHHHH
CTQTFSSFLYQQGLRDRAMAILEQTRIAACERDLPRLNMLAKIQLAEFTLINDEELEPPI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEHHEEEECCCCCCCCC
LPDESELTFLPNQNQAIRARIALVNSMYRLRLGKQFGVAEKYAKKALQSASAISDARTKI
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAQYCQALAVFGLGSSKLAKRTIIDADQLTEHLSCYFTRDWIKEALMSFSPIARDLFDTL
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
PESAETNATKDLEVRKEEADARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITE
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHCH
DTVKWHLKKIFSELKVTNRVRAVSEARLRGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCDNLENWCLRMSDRMWARQRFITQGCIERGRLKASAESESKVILYRAPLGYGKSVQVA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCEEEE
FEAGTQGREEGGVAYINTRSYPGSGEITDSLLAALILYQIKGREPWSVIQSNDDIIESLR
EECCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHH
DTLCNAKNPIKICIDGIGEAEHGVGLVENLICETPNNVKFYIAPSNAGALARLSMMAGVV
HHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH
TYGAHDLVFTEEEVCELPGMHSAKAKNVIEATGGWPALVGLMCHTSNPNLPAATWPETRS
HCCCCCEEECHHHHHHCCCCCCHHHCCHHHCCCCHHHHHHHHEECCCCCCCCCCCHHHHH
YFRNNLLNALPNNTREFICKAAMLEEISVACYDYVYKTEEAHKEIPFINENYALFTPTES
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEECCCEEEECCCCC
SRECMVMHPVLREYLRGLFDSIQRERRSYVLKRVAFWHWRRGEYLHSINAAQEASDHSWA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHH
RAVSDSIILDVALRQGEIEVLRTWFEKVPVRTIKKIASLSISYAWILYFSQQARQAEKIL
HHHHHHHHEEHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASSTESCSRGLDNLDEKGWRKLVDAVGKATQDQFAQSQTLCQQWIDTFGERNMVGKGAAL
HCCHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE
TCQAYIASSDRRFEDLEQLLHRGAVANQSSNQHYAFVWLKTAELQAEIFKGDIAHAMSIL
EEEHHHCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHH
LEANKTAEKMGVSKTFLNKMLGSLELQILHEKSPSLISYESAEESFNFALNYGVTDILWG
HHCCCHHHHHCHHHHHHHHHHHHHEEEEEECCCCCEEEECCHHHCCCEEEECCHHHHHHH
CTQTFSSFLYQQGLRDRAMAILEQTRIAACERDLPRLNMLAKIQLAEFTLINDEELEPPI
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEHHEEEECCCCCCCCC
LPDESELTFLPNQNQAIRARIALVNSMYRLRLGKQFGVAEKYAKKALQSASAISDARTKI
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAQYCQALAVFGLGSSKLAKRTIIDADQLTEHLSCYFTRDWIKEALMSFSPIARDLFDTL
HHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHC
PESAETNATKDLEVRKEEADARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITE
CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHCH
DTVKWHLKKIFSELKVTNRVRAVSEARLRGLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11872724; 11872725