Click here to switch to the map view.

The map label for this gene is yggS [H]

Identifier: 110835530

GI number: 110835530

Start: 3017121

End: 3017813

Strand: Reverse

Name: yggS [H]

Synonym: ABO_2669

Alternate gene names: 110835530

Gene position: 3017813-3017121 (Counterclockwise)

Preceding gene: 110835533

Following gene: 110835529

Centisome position: 96.72

GC content: 60.75

Gene sequence:

>693_bases
ATGATGACTGACGTCAAATCACCACTGCTGCACATTAATGAGCAAATAAAGTCACACTGTGAGCGTGTCGGCCGTGACCC
CCATAGTGTGCAGCTTCTGGCGGTCAGTAAGACCCGCACAGCAGACGAACTGGCCAAACTGGCAGACCAAGGGCAGCGGC
ATTTCGGTGAGAACTACCTGCAGGAGGCGCTGGCCAAGATTGCTGCGCTGCGGGGGCGGGGCTTGGTATGGCATTTCATT
GGTCCAATTCAATCCAACAAGACGCGGGATATCGCGGCTCATTTTGATTGGGTGCACTCGGTGGACCGGCTCAAGGTGGC
GCGCCGCCTCAGCGAACAGCGGCCGCCAGAATCCGCGCCGTTGAACCTGTGTATTCAGGTTAATGTGGACGATGAAGCGA
GCAAGAGTGGGGTGGCGCTGGCGGGCGTGGCCGAGTTGGCTGCCGCCGTGGACGCGCTGCCCAATATCCGGTTGCGGGGG
CTTATGGCCATTCCCCGGGCGGACAACGACGATGGCAACCGCGCTGCCTTCCGACAGCTCGCCATGACACTGTCACAATT
GCGCAATACAATGCCCGCCCTCGATACGCTCTCCATGGGCATGAGCGCGGACTATCCGGTGGCTATTGAAGAAGGTGCTA
CCGTGATCCGGCTGGGCACCGCCCTGTTCGGCCCGCGCCCGCCCAAGGCTTGA

Upstream 100 bases:

>100_bases
CCCCCGTGGGTGACCCTTTGTTATTATGTTGTGGAGCCTTCGCCGGGTTCCTCAGAAAATCGTCGCATGCTTAAAGTAAC
CCGACCTCTTGAGCCGTTCA

Downstream 100 bases:

>100_bases
TAACAAAGGACTGCGCAGTTATGGCACAACAACTAATCGGATTTATCGGCGCCGGCAACATGGCAACCAGCCTGGCCGGA
GGCATGGTGGCGAAAGGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQEALAKIAALRGRGLVWHFI
GPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAPLNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRG
LMAIPRADNDDGNRAAFRQLAMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA

Sequences:

>Translated_230_residues
MMTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQEALAKIAALRGRGLVWHFI
GPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAPLNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRG
LMAIPRADNDDGNRAAFRQLAMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA
>Mature_230_residues
MMTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYLQEALAKIAALRGRGLVWHFI
GPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAPLNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRG
LMAIPRADNDDGNRAAFRQLAMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=231, Percent_Identity=34.1991341991342, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1789321, Length=229, Percent_Identity=50.2183406113537, Blast_Score=230, Evalue=5e-62,
Organism=Caenorhabditis elegans, GI17533025, Length=213, Percent_Identity=36.6197183098592, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6319435, Length=220, Percent_Identity=36.3636363636364, Blast_Score=125, Evalue=5e-30,
Organism=Drosophila melanogaster, GI45550861, Length=252, Percent_Identity=33.7301587301587, Blast_Score=114, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25094; Mature: 25094

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEALAKIAALRGRGLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAP
HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRGLMAIPRADNDDGNRAAFRQL
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHEEEECCCCCCCCCHHHHHHHH
AMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA
HHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCEEEEEHHHHCCCCCCCC
>Mature Secondary Structure
MMTDVKSPLLHINEQIKSHCERVGRDPHSVQLLAVSKTRTADELAKLADQGQRHFGENYL
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
QEALAKIAALRGRGLVWHFIGPIQSNKTRDIAAHFDWVHSVDRLKVARRLSEQRPPESAP
HHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
LNLCIQVNVDDEASKSGVALAGVAELAAAVDALPNIRLRGLMAIPRADNDDGNRAAFRQL
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEHEEEECCCCCCCCCHHHHHHHH
AMTLSQLRNTMPALDTLSMGMSADYPVAIEEGATVIRLGTALFGPRPPKA
HHHHHHHHHHCCHHHHHHHCCCCCCCEEECCCCEEEEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]