| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110835419
Identifier: 110835419
GI number: 110835419
Start: 2898054
End: 2900786
Strand: Direct
Name: 110835419
Synonym: ABO_2558
Alternate gene names: NA
Gene position: 2898054-2900786 (Clockwise)
Preceding gene: 110835415
Following gene: 110835420
Centisome position: 92.88
GC content: 55.73
Gene sequence:
>2733_bases ATGGTATCGCCCCGCGTCTGGCTGGTTTTTGGGCTATTGGCTCTATTGGTAGTATCGCCGCTGCAGGCAGCTGAGAGTGC TGCCTGTGAGGCGGCAGAACTGACTCACGCTCAGCTTAATCAACAACGTAAGCAGCTACAGGAGAACCAGGCGGCGCTGC TGGCGATGATTAAGGGCGAGATCCCCACCTCGGATCAGCTCGACACCGTATTGGGGCGCCCTCTAAATCAGCGACCGCTA CTACCCTTGCCGCCGCCCCAGCCACTAGCCATCACCGACAGCAAGTGCCCGGATCTACAAAATGATATCGACAACCTGAC ACGGCAAATCAACAGCCTGGAACAGTCCATCCATACGTTACGTCATTCGTTTTTTTCCCTCAGCTTTGCTCAACGACAAG CATTCCGAAACTTGGCAATTCACCATGAGCAGCTACAGGCCATGGCGGATAATCCCGATGCCACCATCGCCTCGGCTAGC CAGCGTCTTCAGCAACACACCGAACAGTTGTGGGCGGTGCTTGGGCAACTGCAAAACAACCCCGATATTGCCCTGCAAAC ATTGGACGCATTGTGGCTGAATTTGCCGGCCTTACCGCTGCCCAGCAGCGGCGCCCGCTCCGACGAATGGCGAACCCTGC TCAAAGCTAGACTGGATATCCAGAGTAACGGCCGCACCCTACGCTCGGAGCAATGGAAAACCCGGCCATTGCTGACCCAA ATCGATAACCTGGGAGGACTGCGCCAGGCACCACAACTGTTGCAACACGAAAGCCAGCGAATTACTCAACACCTGAGGAA CATCCTCGTGCTGGTTCGCTACGATCTGAACGGCCCCTTACGCGATGGCGGCTACATGCCAGTGCTGCAGAACATTCTCG CCTTGATTCTCGGCGCCGCAGGCTTCTGGCTACTAATCCAGCTGGCTCAGCGCACCCGCCACTGGGCGCTCGCTTTACAC GACCGGGTGGTTCAACTCAGTGGTGAACGCCGCTGGTTACTCAATGCCAGCCGTTTGATCAGTGGCTTGGCGCCGATTCT GCCGTGGGTTTTGATCTGGCTAGCGCTTGATCATCTAGGTTCCTTATTGGACACCCCATCCAGCAAGATTCTGCTATGGC TGCTGCCACTGGCCCAGCTCTATGTCATCTACGGGCTGCTTTGCCTGATCGGTGAGTGGTTAATACTGCGTGTGGCACAA AGCGCCAATGCCTACCTAGGGGGCGAGCAAACCCGTCAAGTGACACAGCACGCCCGCAACCTAGCCCGCTGGATCATTAT TCCCTGGGCGCCGGTCATCATCGTTTGGGAAAGCCTAGGCCCTTCGCTAATGTATTACCTGTTCCTTGGGGTACTAATGG TGACCATCTATACCGGGCTTGGACGCCTGCTGGCCTTACGCCATAAGGACTATCAAGTGTGTCTGCAAGCCCCGATGCCC TCCCAAGTAGACCCACTGATCGCCCGCTTGTTAAGCCCGAGATTATTCTGGTTGGTGGCGCCCCTACTACTGCCCATTGC ACTGGTAAGTTTCTTGGTTGGTTTTGTGGACCGGGTACTGGCGGATTTTGACTGGTATATGCGACTCAAAGCCCGCTGGT TCCGTTTCCGTGCCAATGTAGCCACCGACGAAGACGACGGTGGCAATAGCGAAGAACCGGTGGCCCAATCCTACGAACGC TGGTTTGCCCCCGCCTTGCCCGACGATGTGAACAAACCCCCGTTCATCGACACCGGCTTAGTAGCCGCCATAGAAAAAAG CATTCAGCGCTGGCACGAAGATAAAACCGATGAAAACGCCTTGGTGGTTTCCGGTGAAAAAGGCTGCGGCAAAAGTGTCT CTCTTGGCAAGCTCGACAAGGTACTGGAAAAAAGCTGTGAATCCTTAAATACCTTGCACCTGAAAGTACCCGCCAAGACC TGCACCCCAGAAGCCATTCACCAGCTGATTGGCGATGCACTGGGCACCGACCTAATCAACGACGGGCCGGCCGCGCTGGT CAAGGACGATGAACACAGGCAGCCCACCCTGGTGGTGCTAGACGAAGCGCAAAATTTCTTCCTTGCCCAACTGGGCGGCC TGGAAGGCTGGCGCACGGTGCTCAATCTGGTTAACGCCCGGGTGGACAATGTGTTCTGGCTGCTACTGATCAACAACCAA AGCTGGGCCTACCTATGCAACGTGTTCGGTCGGGAATACCAGTTTCGTAATGTGGTTCGGGTGAAACGCTGGGGACAAAC CGATATTCGTTCACTGATTCTCAGTCGTCATCATCTAAGTGGTTTCCAGCTACGTTACGACGAAGTGTTATTGTCCTCTC GGGGGCCGGAAGCCGGCAACCTGCGCAACGCCGAGCAACGGTATTTCAGCCTACTCTGGGATGCCAGTCGCGGTAATCCC ATGGTGGCATTACGGCTGTTCCTGACCTCGGTAAAAGTCAAAGGCCGACAAGTAACCGTGGGCCTGCCCAACGCCCCCTC GGCCAGTATTCTCGATGGCATGGGTGACAACTCCCTGTTTGTTTATGCCGCCATTGCCACCCACGAAAATCTGACCAGCC ACGAAATCAGTGCGGTCACACACCTGCCAGAAAATGTGGTGCGTTATGCGCTGAAAGGCGGTTTCGATGCAGGGTTTCTG CACAAGAGCGATGATGGCCGCTACCGGTTGGTGTCCCTATGGTACCAGCAGGTGATCAGCTACCTAACACGGAAGAACCT GCTCAATGAATGA
Upstream 100 bases:
>100_bases GCAATCGCTATACAAGCCAGGCATCGCCTTCCTACAATGCTCACAACACAGAACAACACCAAGCCTGACCGCAGGCCTTC ATGGAGCAGAGGAACAGCGA
Downstream 100 bases:
>100_bases TGGAAATATAGTCAACGACCTGACTGTCGTAGTGGAATTGTTCAACGTCTACGCATTAATGCTGCTGTTTATCGGTGGAT TTGTGCTGTGGGCCCTGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 910; Mature: 910
Protein sequence:
>910_residues MVSPRVWLVFGLLALLVVSPLQAAESAACEAAELTHAQLNQQRKQLQENQAALLAMIKGEIPTSDQLDTVLGRPLNQRPL LPLPPPQPLAITDSKCPDLQNDIDNLTRQINSLEQSIHTLRHSFFSLSFAQRQAFRNLAIHHEQLQAMADNPDATIASAS QRLQQHTEQLWAVLGQLQNNPDIALQTLDALWLNLPALPLPSSGARSDEWRTLLKARLDIQSNGRTLRSEQWKTRPLLTQ IDNLGGLRQAPQLLQHESQRITQHLRNILVLVRYDLNGPLRDGGYMPVLQNILALILGAAGFWLLIQLAQRTRHWALALH DRVVQLSGERRWLLNASRLISGLAPILPWVLIWLALDHLGSLLDTPSSKILLWLLPLAQLYVIYGLLCLIGEWLILRVAQ SANAYLGGEQTRQVTQHARNLARWIIIPWAPVIIVWESLGPSLMYYLFLGVLMVTIYTGLGRLLALRHKDYQVCLQAPMP SQVDPLIARLLSPRLFWLVAPLLLPIALVSFLVGFVDRVLADFDWYMRLKARWFRFRANVATDEDDGGNSEEPVAQSYER WFAPALPDDVNKPPFIDTGLVAAIEKSIQRWHEDKTDENALVVSGEKGCGKSVSLGKLDKVLEKSCESLNTLHLKVPAKT CTPEAIHQLIGDALGTDLINDGPAALVKDDEHRQPTLVVLDEAQNFFLAQLGGLEGWRTVLNLVNARVDNVFWLLLINNQ SWAYLCNVFGREYQFRNVVRVKRWGQTDIRSLILSRHHLSGFQLRYDEVLLSSRGPEAGNLRNAEQRYFSLLWDASRGNP MVALRLFLTSVKVKGRQVTVGLPNAPSASILDGMGDNSLFVYAAIATHENLTSHEISAVTHLPENVVRYALKGGFDAGFL HKSDDGRYRLVSLWYQQVISYLTRKNLLNE
Sequences:
>Translated_910_residues MVSPRVWLVFGLLALLVVSPLQAAESAACEAAELTHAQLNQQRKQLQENQAALLAMIKGEIPTSDQLDTVLGRPLNQRPL LPLPPPQPLAITDSKCPDLQNDIDNLTRQINSLEQSIHTLRHSFFSLSFAQRQAFRNLAIHHEQLQAMADNPDATIASAS QRLQQHTEQLWAVLGQLQNNPDIALQTLDALWLNLPALPLPSSGARSDEWRTLLKARLDIQSNGRTLRSEQWKTRPLLTQ IDNLGGLRQAPQLLQHESQRITQHLRNILVLVRYDLNGPLRDGGYMPVLQNILALILGAAGFWLLIQLAQRTRHWALALH DRVVQLSGERRWLLNASRLISGLAPILPWVLIWLALDHLGSLLDTPSSKILLWLLPLAQLYVIYGLLCLIGEWLILRVAQ SANAYLGGEQTRQVTQHARNLARWIIIPWAPVIIVWESLGPSLMYYLFLGVLMVTIYTGLGRLLALRHKDYQVCLQAPMP SQVDPLIARLLSPRLFWLVAPLLLPIALVSFLVGFVDRVLADFDWYMRLKARWFRFRANVATDEDDGGNSEEPVAQSYER WFAPALPDDVNKPPFIDTGLVAAIEKSIQRWHEDKTDENALVVSGEKGCGKSVSLGKLDKVLEKSCESLNTLHLKVPAKT CTPEAIHQLIGDALGTDLINDGPAALVKDDEHRQPTLVVLDEAQNFFLAQLGGLEGWRTVLNLVNARVDNVFWLLLINNQ SWAYLCNVFGREYQFRNVVRVKRWGQTDIRSLILSRHHLSGFQLRYDEVLLSSRGPEAGNLRNAEQRYFSLLWDASRGNP MVALRLFLTSVKVKGRQVTVGLPNAPSASILDGMGDNSLFVYAAIATHENLTSHEISAVTHLPENVVRYALKGGFDAGFL HKSDDGRYRLVSLWYQQVISYLTRKNLLNE >Mature_910_residues MVSPRVWLVFGLLALLVVSPLQAAESAACEAAELTHAQLNQQRKQLQENQAALLAMIKGEIPTSDQLDTVLGRPLNQRPL LPLPPPQPLAITDSKCPDLQNDIDNLTRQINSLEQSIHTLRHSFFSLSFAQRQAFRNLAIHHEQLQAMADNPDATIASAS QRLQQHTEQLWAVLGQLQNNPDIALQTLDALWLNLPALPLPSSGARSDEWRTLLKARLDIQSNGRTLRSEQWKTRPLLTQ IDNLGGLRQAPQLLQHESQRITQHLRNILVLVRYDLNGPLRDGGYMPVLQNILALILGAAGFWLLIQLAQRTRHWALALH DRVVQLSGERRWLLNASRLISGLAPILPWVLIWLALDHLGSLLDTPSSKILLWLLPLAQLYVIYGLLCLIGEWLILRVAQ SANAYLGGEQTRQVTQHARNLARWIIIPWAPVIIVWESLGPSLMYYLFLGVLMVTIYTGLGRLLALRHKDYQVCLQAPMP SQVDPLIARLLSPRLFWLVAPLLLPIALVSFLVGFVDRVLADFDWYMRLKARWFRFRANVATDEDDGGNSEEPVAQSYER WFAPALPDDVNKPPFIDTGLVAAIEKSIQRWHEDKTDENALVVSGEKGCGKSVSLGKLDKVLEKSCESLNTLHLKVPAKT CTPEAIHQLIGDALGTDLINDGPAALVKDDEHRQPTLVVLDEAQNFFLAQLGGLEGWRTVLNLVNARVDNVFWLLLINNQ SWAYLCNVFGREYQFRNVVRVKRWGQTDIRSLILSRHHLSGFQLRYDEVLLSSRGPEAGNLRNAEQRYFSLLWDASRGNP MVALRLFLTSVKVKGRQVTVGLPNAPSASILDGMGDNSLFVYAAIATHENLTSHEISAVTHLPENVVRYALKGGFDAGFL HKSDDGRYRLVSLWYQQVISYLTRKNLLNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 102328; Mature: 102328
Theoretical pI: Translated: 8.07; Mature: 8.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSPRVWLVFGLLALLVVSPLQAAESAACEAAELTHAQLNQQRKQLQENQAALLAMIKGE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IPTSDQLDTVLGRPLNQRPLLPLPPPQPLAITDSKCPDLQNDIDNLTRQINSLEQSIHTL CCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH RHSFFSLSFAQRQAFRNLAIHHEQLQAMADNPDATIASASQRLQQHTEQLWAVLGQLQNN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PDIALQTLDALWLNLPALPLPSSGARSDEWRTLLKARLDIQSNGRTLRSEQWKTRPLLTQ CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH IDNLGGLRQAPQLLQHESQRITQHLRNILVLVRYDLNGPLRDGGYMPVLQNILALILGAA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH GFWLLIQLAQRTRHWALALHDRVVQLSGERRWLLNASRLISGLAPILPWVLIWLALDHLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLLDTPSSKILLWLLPLAQLYVIYGLLCLIGEWLILRVAQSANAYLGGEQTRQVTQHARN HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LARWIIIPWAPVIIVWESLGPSLMYYLFLGVLMVTIYTGLGRLLALRHKDYQVCLQAPMP HHHEEEECCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCC SQVDPLIARLLSPRLFWLVAPLLLPIALVSFLVGFVDRVLADFDWYMRLKARWFRFRANV CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATDEDDGGNSEEPVAQSYERWFAPALPDDVNKPPFIDTGLVAAIEKSIQRWHEDKTDENA CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE LVVSGEKGCGKSVSLGKLDKVLEKSCESLNTLHLKVPAKTCTPEAIHQLIGDALGTDLIN EEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCHHCC DGPAALVKDDEHRQPTLVVLDEAQNFFLAQLGGLEGWRTVLNLVNARVDNVFWLLLINNQ CCCCEEECCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCC SWAYLCNVFGREYQFRNVVRVKRWGQTDIRSLILSRHHLSGFQLRYDEVLLSSRGPEAGN CHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC LRNAEQRYFSLLWDASRGNPMVALRLFLTSVKVKGRQVTVGLPNAPSASILDGMGDNSLF CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCEE VYAAIATHENLTSHEISAVTHLPENVVRYALKGGFDAGFLHKSDDGRYRLVSLWYQQVIS EEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH YLTRKNLLNE HHHHHHHCCC >Mature Secondary Structure MVSPRVWLVFGLLALLVVSPLQAAESAACEAAELTHAQLNQQRKQLQENQAALLAMIKGE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC IPTSDQLDTVLGRPLNQRPLLPLPPPQPLAITDSKCPDLQNDIDNLTRQINSLEQSIHTL CCCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH RHSFFSLSFAQRQAFRNLAIHHEQLQAMADNPDATIASASQRLQQHTEQLWAVLGQLQNN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC PDIALQTLDALWLNLPALPLPSSGARSDEWRTLLKARLDIQSNGRTLRSEQWKTRPLLTQ CCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH IDNLGGLRQAPQLLQHESQRITQHLRNILVLVRYDLNGPLRDGGYMPVLQNILALILGAA HHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH GFWLLIQLAQRTRHWALALHDRVVQLSGERRWLLNASRLISGLAPILPWVLIWLALDHLG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLLDTPSSKILLWLLPLAQLYVIYGLLCLIGEWLILRVAQSANAYLGGEQTRQVTQHARN HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH LARWIIIPWAPVIIVWESLGPSLMYYLFLGVLMVTIYTGLGRLLALRHKDYQVCLQAPMP HHHEEEECCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEECCCCC SQVDPLIARLLSPRLFWLVAPLLLPIALVSFLVGFVDRVLADFDWYMRLKARWFRFRANV CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATDEDDGGNSEEPVAQSYERWFAPALPDDVNKPPFIDTGLVAAIEKSIQRWHEDKTDENA CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE LVVSGEKGCGKSVSLGKLDKVLEKSCESLNTLHLKVPAKTCTPEAIHQLIGDALGTDLIN EEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCHHCC DGPAALVKDDEHRQPTLVVLDEAQNFFLAQLGGLEGWRTVLNLVNARVDNVFWLLLINNQ CCCCEEECCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEEEECCC SWAYLCNVFGREYQFRNVVRVKRWGQTDIRSLILSRHHLSGFQLRYDEVLLSSRGPEAGN CHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC LRNAEQRYFSLLWDASRGNPMVALRLFLTSVKVKGRQVTVGLPNAPSASILDGMGDNSLF CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCCCCEE VYAAIATHENLTSHEISAVTHLPENVVRYALKGGFDAGFLHKSDDGRYRLVSLWYQQVIS EEEEEECCCCCCHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH YLTRKNLLNE HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA