| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is fpvB [H]
Identifier: 110835348
GI number: 110835348
Start: 2820529
End: 2821662
Strand: Direct
Name: fpvB [H]
Synonym: ABO_2487
Alternate gene names: 110835348
Gene position: 2820529-2821662 (Clockwise)
Preceding gene: 110835347
Following gene: 110835352
Centisome position: 90.4
GC content: 56.7
Gene sequence:
>1134_bases ATGGGCCGGACGCTATGTAGAGACAAAACCCAGGACACTTTCGATGTCTACGCCAACGGGCCCTTCGCACTGTTTGGCCG CCAACATGAACTGGTGGTGGGTGCCAGTTATTCGGACGCCGAGAGTGATTACACCGGCCAGTCACCGGTCAGTATCAATA ACGTGGTACCGGACCTGCTTAATTGGAATGGCGACATTCCAAAACCGGCCTGGGCCGCGCCAACCACCGTGGAGGACCAG AGCAGCAGCCAAACAAGCCTGTACGCCACCGCCCGCTTCAAACCCACTGATCGTCTTGCTGTTATTGCCGGCGGGCAAGT TGTGGACTGGAAACAAGAAACCACAGGCTTTAACGGGCGAGGCCCGATTGACGACGAATCCTATCAGGAAAATGGCGAAG TGGTTCCCTACCTGGGGGTGGTCTATGACCTAACCGATCACCACTCGGTGTACGCCAGCTACACCCGCATCTTTCAACCG CAAACCGTGCGCGACATCAACAATCAAATTCTTGCCCCGGAAGAAGGCAACAGTTACGAAGCCGGCCTGAAGAGTGAGCT CAATGAGGGCCGTCTAAACACCACCGTCGCGGTGTTTCGTATCAATCAGGATAACCTGGCCGAATCCACCGGCCAGCCCA TTCCCGGCGGGCCAGCCAACGCCGAGGCCTACCGCGCCGTGGATGGCGCCGAAACCAATGGCGTTGAGCTGGAAGCAGCC GGCGAGATTCTGCCTGGCTGGCAGGTACAGGCAGGCTACACCTACCGCATTACTGAAGATCCGGATGGCGACGAGCTAAA CACCACCTCACCGGAAGACATGATTCGTCTGTCCACCCAGTACCGTTTCCGCGGTGACCTGAACGGCCTGACTATCGGCA CAGCAGTATCTTGGCAGAACAAAACCTATGCGTTCGTAACCCGCCCCGGGGCCAGCGCCGACTACAAGTTCGTTCAGGAA AGCTACACGCTGGTGGATTTGATGGCCCGCTACCAAGTCACCGCCACCTTGTCCGTGGGCGCCAACGTGAGCAATCTGAC GGACGAAAAGTACTTCAATAACCTGGGGTTTTATAACGGGGGTTACTACGGAGATGCTCGCAAATACAGCCTGAACATGG ACTATCGATTCTAA
Upstream 100 bases:
>100_bases ACAGCAAGTTTGCCTACAATAATCAGCAGAGCAACTACGACGCTCAGCTAGCCTCCGCCGGTGGCGGCCAGCTTAATCGC GATGGCAGCGGCAAGACACT
Downstream 100 bases:
>100_bases TTGTCACGCGGATAGCGCCCCGGATGGAATACGTCGGGGCGCTATCCACTATTCGCCTTCAGGAAAGAAGATACGTTCTT TCTCAATGACAATCCGGCGG
Product: ferripyoverdine receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MGRTLCRDKTQDTFDVYANGPFALFGRQHELVVGASYSDAESDYTGQSPVSINNVVPDLLNWNGDIPKPAWAAPTTVEDQ SSSQTSLYATARFKPTDRLAVIAGGQVVDWKQETTGFNGRGPIDDESYQENGEVVPYLGVVYDLTDHHSVYASYTRIFQP QTVRDINNQILAPEEGNSYEAGLKSELNEGRLNTTVAVFRINQDNLAESTGQPIPGGPANAEAYRAVDGAETNGVELEAA GEILPGWQVQAGYTYRITEDPDGDELNTTSPEDMIRLSTQYRFRGDLNGLTIGTAVSWQNKTYAFVTRPGASADYKFVQE SYTLVDLMARYQVTATLSVGANVSNLTDEKYFNNLGFYNGGYYGDARKYSLNMDYRF
Sequences:
>Translated_377_residues MGRTLCRDKTQDTFDVYANGPFALFGRQHELVVGASYSDAESDYTGQSPVSINNVVPDLLNWNGDIPKPAWAAPTTVEDQ SSSQTSLYATARFKPTDRLAVIAGGQVVDWKQETTGFNGRGPIDDESYQENGEVVPYLGVVYDLTDHHSVYASYTRIFQP QTVRDINNQILAPEEGNSYEAGLKSELNEGRLNTTVAVFRINQDNLAESTGQPIPGGPANAEAYRAVDGAETNGVELEAA GEILPGWQVQAGYTYRITEDPDGDELNTTSPEDMIRLSTQYRFRGDLNGLTIGTAVSWQNKTYAFVTRPGASADYKFVQE SYTLVDLMARYQVTATLSVGANVSNLTDEKYFNNLGFYNGGYYGDARKYSLNMDYRF >Mature_376_residues GRTLCRDKTQDTFDVYANGPFALFGRQHELVVGASYSDAESDYTGQSPVSINNVVPDLLNWNGDIPKPAWAAPTTVEDQS SSQTSLYATARFKPTDRLAVIAGGQVVDWKQETTGFNGRGPIDDESYQENGEVVPYLGVVYDLTDHHSVYASYTRIFQPQ TVRDINNQILAPEEGNSYEAGLKSELNEGRLNTTVAVFRINQDNLAESTGQPIPGGPANAEAYRAVDGAETNGVELEAAG EILPGWQVQAGYTYRITEDPDGDELNTTSPEDMIRLSTQYRFRGDLNGLTIGTAVSWQNKTYAFVTRPGASADYKFVQES YTLVDLMARYQVTATLSVGANVSNLTDEKYFNNLGFYNGGYYGDARKYSLNMDYRF
Specific function: Receptor for the siderophore ferripyoverdine [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=371, Percent_Identity=40.1617250673854, Blast_Score=254, Evalue=5e-69, Organism=Escherichia coli, GI1786344, Length=387, Percent_Identity=25.0645994832041, Blast_Score=72, Evalue=6e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR011662 - InterPro: IPR000531 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF07660 STN; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 41592; Mature: 41461
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRTLCRDKTQDTFDVYANGPFALFGRQHELVVGASYSDAESDYTGQSPVSINNVVPDLL CCCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHH NWNGDIPKPAWAAPTTVEDQSSSQTSLYATARFKPTDRLAVIAGGQVVDWKQETTGFNGR CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCEEEECHHHHCCCCCC GPIDDESYQENGEVVPYLGVVYDLTDHHSVYASYTRIFQPQTVRDINNQILAPEEGNSYE CCCCCCCHHCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCEECCCCCCCCC AGLKSELNEGRLNTTVAVFRINQDNLAESTGQPIPGGPANAEAYRAVDGAETNGVELEAA CCHHHHHCCCCCEEEEEEEEECCHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCEEEEEC GEILPGWQVQAGYTYRITEDPDGDELNTTSPEDMIRLSTQYRFRGDLNGLTIGTAVSWQN CCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHEEEEEEEEEECCCCCEEEEEEEEECC KTYAFVTRPGASADYKFVQESYTLVDLMARYQVTATLSVGANVSNLTDEKYFNNLGFYNG CEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHCCCCCCC GYYGDARKYSLNMDYRF CEECCCEEEEEECCCCC >Mature Secondary Structure GRTLCRDKTQDTFDVYANGPFALFGRQHELVVGASYSDAESDYTGQSPVSINNVVPDLL CCCCCCCCCCCCEEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHH NWNGDIPKPAWAAPTTVEDQSSSQTSLYATARFKPTDRLAVIAGGQVVDWKQETTGFNGR CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCEEEECHHHHCCCCCC GPIDDESYQENGEVVPYLGVVYDLTDHHSVYASYTRIFQPQTVRDINNQILAPEEGNSYE CCCCCCCHHCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCHHHHHCCCCEECCCCCCCCC AGLKSELNEGRLNTTVAVFRINQDNLAESTGQPIPGGPANAEAYRAVDGAETNGVELEAA CCHHHHHCCCCCEEEEEEEEECCHHHHHHCCCCCCCCCCCCHHEEEECCCCCCCEEEEEC GEILPGWQVQAGYTYRITEDPDGDELNTTSPEDMIRLSTQYRFRGDLNGLTIGTAVSWQN CCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHEEEEEEEEEECCCCCEEEEEEEEECC KTYAFVTRPGASADYKFVQESYTLVDLMARYQVTATLSVGANVSNLTDEKYFNNLGFYNG CEEEEEECCCCCCCHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCHHHHHHCCCCCCC GYYGDARKYSLNMDYRF CEECCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8335619; 8918232; 10984043 [H]