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The map label for this gene is ubiD

Identifier: 110835326

GI number: 110835326

Start: 2792316

End: 2793791

Strand: Direct

Name: ubiD

Synonym: ABO_2465

Alternate gene names: 110835326

Gene position: 2792316-2793791 (Clockwise)

Preceding gene: 110835325

Following gene: 110835327

Centisome position: 89.49

GC content: 59.62

Gene sequence:

>1476_bases
ATGAAATACCGCGATCTTCGAGACTTCATTAGCCAACTGGAACAGCTCGGCGAGCTTAAGCGCATCACTGTGCCGGTGGA
TCCTAAACTGGAAATGACGGAAATTTGCGACCGCACTCTGCGAGCCGGCGGGCCAGCCTTGCTGTTCGAAAACCCGGTGG
GGTTTGGCACTCCGGTGCTGGGCAACCTGTTCGGCACTGAACGGCGGGTGGCACTGGGCATGGGCCGTGACTCGGTGGCA
GAGCTTCGCGAGCTGGGTGAGCTGCTGGCGTTTCTCAAGGAGCCGGAGCCGCCCAAGGGTTTCCGTGATGCCTGGGAAAA
ACTGCCGGTATTTCGCAAGGTCCTGAGCATGAGCCCCAAGGTGTCCAGCTCCGGCCCCTGCCAGGAAAAGGTGCTGGAAG
GCGACGAGGTGGACCTGTACAAACTGCCCATCCAGACCTGCTGGCCTGATGATGCCGGCCCCCTGGTGACCTGGCCGCTA
GTCATCACCCGCGGCCCTAACAAGGAACGTCAGAATCTGGGGATTTACCGCCAACAACTGATCGGCCGCAACAAGCTGAT
CATGCGCTGGCTGAGCCACCGGGGCGGAGCACTGGATTTCCAAGAATGGCAACAGCAACATCCTGGCGAACCGTTCCCGG
TGAGCGTGGCACTGGGCGCCGACCCGGCCACGATTCTGGGCGCTGTCACCCCAGTGCCGGATACCCTCAGCGAATACGCC
TTTGCCGGTTTGCTGCGCGGCTCCAAGACCGAGCTGGTGAAATGTATCGGCAATGACCTGCAAGTGCCCGCCAGCGCCGA
ATTCGTTTTGGAAGGCTTTCTTTATCCAGGTGACATGGCTGACGAAGGCCCCTTCGGCGACCACACCGGCTATTACAATG
AAGTGGAGCGTTTCCCAGTATTCACCGTGGAGCGCATCACTCACCGTCGCAACCCGATTTATCACAGCACCTATACGGGC
CGGCCGCCGGATGAACCCGCGGTACTCGGCGTGGCCATGAATGAAATCTTCGTGCCCATCCTGAAAAAGCAGTTTCCCGA
GATCGTCGACTTTTACCTGCCGCCGGAAGGCTGCTCCTACCGCATGGCCGTGGTCACCATGAAGAAGCAGTACCCCGGCC
ACGCCAAGCGCGTGATGATGGGCGTTTGGTCATTCCTGCGCCAGTTCATGTACACCAAGTTCGTGATCGTCTGCGATGAC
GACGTGAATGCCCGTGACTGGAAAGATGTGATCTGGGCCATGACCACCCGCATGGACCCGGCCCGCGATACCGTGATGAT
CGAAAACACGCCCATTGATTATCTGGATTTCGCCTCTCCGGTGGCCGGCCTTGGTTCCAAAATGGGAATGGATGCCACGA
ACAAGTGGGCAGGCGAAACCACCCGCGAGTGGGGCCGCGCCATCGCCATGGATCCCGCTGTAAAAACCCGGGTGGATGAA
ATGTGGTCCTCACTGGGCATCGACACCCCGGAATAA

Upstream 100 bases:

>100_bases
TTATTTTTCTTTGCTTCATGTTCCTGCCGTCCAGCGTTTGCCGTCCTTACTGTTATACTCGCCGCACAACCCGCTCGGTT
ACCGGATCAAAAGGAAGGCC

Downstream 100 bases:

>100_bases
TCCTAGAATGGGCGCCGGCTCACAGAGCAGGGTGGCGCCCAAATTCCAGCGTGGTACGATCGTACGAAAAATACAACAAG
GTCGCCCATGCCTGTTTTTT

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 491; Mature: 491

Protein sequence:

>491_residues
MKYRDLRDFISQLEQLGELKRITVPVDPKLEMTEICDRTLRAGGPALLFENPVGFGTPVLGNLFGTERRVALGMGRDSVA
ELRELGELLAFLKEPEPPKGFRDAWEKLPVFRKVLSMSPKVSSSGPCQEKVLEGDEVDLYKLPIQTCWPDDAGPLVTWPL
VITRGPNKERQNLGIYRQQLIGRNKLIMRWLSHRGGALDFQEWQQQHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTELVKCIGNDLQVPASAEFVLEGFLYPGDMADEGPFGDHTGYYNEVERFPVFTVERITHRRNPIYHSTYTG
RPPDEPAVLGVAMNEIFVPILKKQFPEIVDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRMDPARDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWAGETTREWGRAIAMDPAVKTRVDE
MWSSLGIDTPE

Sequences:

>Translated_491_residues
MKYRDLRDFISQLEQLGELKRITVPVDPKLEMTEICDRTLRAGGPALLFENPVGFGTPVLGNLFGTERRVALGMGRDSVA
ELRELGELLAFLKEPEPPKGFRDAWEKLPVFRKVLSMSPKVSSSGPCQEKVLEGDEVDLYKLPIQTCWPDDAGPLVTWPL
VITRGPNKERQNLGIYRQQLIGRNKLIMRWLSHRGGALDFQEWQQQHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTELVKCIGNDLQVPASAEFVLEGFLYPGDMADEGPFGDHTGYYNEVERFPVFTVERITHRRNPIYHSTYTG
RPPDEPAVLGVAMNEIFVPILKKQFPEIVDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRMDPARDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWAGETTREWGRAIAMDPAVKTRVDE
MWSSLGIDTPE
>Mature_491_residues
MKYRDLRDFISQLEQLGELKRITVPVDPKLEMTEICDRTLRAGGPALLFENPVGFGTPVLGNLFGTERRVALGMGRDSVA
ELRELGELLAFLKEPEPPKGFRDAWEKLPVFRKVLSMSPKVSSSGPCQEKVLEGDEVDLYKLPIQTCWPDDAGPLVTWPL
VITRGPNKERQNLGIYRQQLIGRNKLIMRWLSHRGGALDFQEWQQQHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
FAGLLRGSKTELVKCIGNDLQVPASAEFVLEGFLYPGDMADEGPFGDHTGYYNEVERFPVFTVERITHRRNPIYHSTYTG
RPPDEPAVLGVAMNEIFVPILKKQFPEIVDFYLPPEGCSYRMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVIVCDD
DVNARDWKDVIWAMTTRMDPARDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWAGETTREWGRAIAMDPAVKTRVDE
MWSSLGIDTPE

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=487, Percent_Identity=77.82340862423, Blast_Score=807, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=447, Percent_Identity=26.3982102908277, Blast_Score=137, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_ALCBS (Q0VLN5)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_694185.1
- ProteinModelPortal:   Q0VLN5
- SMR:   Q0VLN5
- STRING:   Q0VLN5
- GeneID:   4213758
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2465
- NMPDR:   fig|393595.12.peg.2468
- eggNOG:   COG0043
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- PhylomeDB:   Q0VLN5
- BioCyc:   ABOR393595:ABO_2465-MONOMER
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 55225; Mature: 55225

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYRDLRDFISQLEQLGELKRITVPVDPKLEMTEICDRTLRAGGPALLFENPVGFGTPVL
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
GNLFGTERRVALGMGRDSVAELRELGELLAFLKEPEPPKGFRDAWEKLPVFRKVLSMSPK
HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VSSSGPCQEKVLEGDEVDLYKLPIQTCWPDDAGPLVTWPLVITRGPNKERQNLGIYRQQL
CCCCCCHHHHHCCCCCCEEEECCHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
IGRNKLIMRWLSHRGGALDFQEWQQQHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGSKTELVKCIGNDLQVPASAEFVLEGFLYPGDMADEGPFGDHTGYYNEVERFPV
HHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
FTVERITHRRNPIYHSTYTGRPPDEPAVLGVAMNEIFVPILKKQFPEIVDFYLPPEGCSY
HHHHHHHHCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAMTTRMDP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
ARDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWAGETTREWGRAIAMDPAVKTRVDE
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHCCEEECCCHHHHHHHH
MWSSLGIDTPE
HHHHCCCCCCC
>Mature Secondary Structure
MKYRDLRDFISQLEQLGELKRITVPVDPKLEMTEICDRTLRAGGPALLFENPVGFGTPVL
CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHH
GNLFGTERRVALGMGRDSVAELRELGELLAFLKEPEPPKGFRDAWEKLPVFRKVLSMSPK
HHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC
VSSSGPCQEKVLEGDEVDLYKLPIQTCWPDDAGPLVTWPLVITRGPNKERQNLGIYRQQL
CCCCCCHHHHHCCCCCCEEEECCHHHCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
IGRNKLIMRWLSHRGGALDFQEWQQQHPGEPFPVSVALGADPATILGAVTPVPDTLSEYA
HCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHCCCCCCHHHHHHH
FAGLLRGSKTELVKCIGNDLQVPASAEFVLEGFLYPGDMADEGPFGDHTGYYNEVERFPV
HHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCC
FTVERITHRRNPIYHSTYTGRPPDEPAVLGVAMNEIFVPILKKQFPEIVDFYLPPEGCSY
HHHHHHHHCCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
RMAVVTMKKQYPGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWKDVIWAMTTRMDP
EEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHCCCC
ARDTVMIENTPIDYLDFASPVAGLGSKMGMDATNKWAGETTREWGRAIAMDPAVKTRVDE
CCCEEEEECCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCHHHHHCCEEECCCHHHHHHHH
MWSSLGIDTPE
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA