| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110835296
Identifier: 110835296
GI number: 110835296
Start: 2756171
End: 2757619
Strand: Direct
Name: 110835296
Synonym: ABO_2435
Alternate gene names: NA
Gene position: 2756171-2757619 (Clockwise)
Preceding gene: 110835295
Following gene: 110835297
Centisome position: 88.33
GC content: 53.35
Gene sequence:
>1449_bases ATGAAGCAGTATGCCGTCCCCTTTGCCGCTCTGTGTTTTAGCGGCCTAGCCCTACTGGGCTGTAGCGACAATGACAACAA CCAACCCTCCTCCGCCGGCAGCGACAGCAACAGCACCGATGGCATTGCCGGAGTGTGGCAAAGTGACCAGCAAGTGCTGG TACTTGAAGCCAATGGAGACCTCTACCTTCCCGCCGACACAAACCTTCAGGGGCTGCGCTGGGAGCAACAGGAGGACAAC TTCACATTCCACTACTTGGACAATCGTGAAAAAAAAGTCACTGAGGCCACCGCCAGCGGCCAACAACAAGATGACTTACT GACCCTTACGCCGACTACCTCATCGCCATCAAACCTAAAAGAAGCCAATAGCGAAAACACAAACGAAAACACAGAAGAGT CCGGCTCAGATATCGATGAAGAAACGGACAATGCCTCCTCCTCGCCATTGTTCAGCGGCGACTACCAGCGTGCTAACTTG GCCGTGGCCCATATCAGCGGTACCGCCACCCGCCCGCAGAACAGTGAGCTGCCCGACAATGCCGTCCTCACCGTGGCGCT GCTGGACAACCAGATCAATACCAGTGACCCTACCGCCCAGCTCATTTCCAAACGCCTGATCCGGCTGGATGAAGACAAAA CGGACGAGCCCTTCCGCCTTTATTATCTGCCCGAGGATCTGAAAACAGACCACGAATACCAGATTATCAGCCAAATTGTG GCCGATGGAGGACTCTTCTATCAGTCCGACGCGGTAACCCTGAAAGGTAACAAACAAGGTTTTGCCGATATTATCCTGCC ACTTAACGAAGTAATGACGGACAGTGAAACCCTGCGCGGCGCCATTACCCGCGGCAAACCTGGCCAGCACCGGGATATCT TCACTCTATGCAACAGCGATCAACAACTGCTCATTCGTGGCCCGCAAAGTGGCGATTTACTGTCAGCCTACGACAACGCT ATCCGCTACCCGCAGCAACCCCGGGTCGCCATCGTTAGCGGCTTGGTTCGCAAGGTCCCCGGCCAACAGGCAAACAGCAC CGAGACCGCTTTAATTGTGGAAAGTTTCGAACTGGAAACAGGTATGGATAATTGCCAACTCCCCACCGCCGAGCTAATCA ATACCCGCTGGCAGTTAACTCACCTAGGTGAAGACCGCATTATTCTTGGCAACTCCGCACACGTTCCCACCCTCACTTTT AACGCCGAGGGCAACGTCAAAGGACATGGCAGCTGCAACAGCCTTAGCGGCAACTACCTGCTCGACGACCATCAACTGGC ATTGTCCGATCTAGCAACCACGCGCAAAGCCTGCTCCACCAGCGTCATTGAAGATCTTTTCTTTAAAGCGATCAAAGCTA GTGATCACTTCCGAATTGATGGCGAATGGTTAACGTTATTCGATGAAAAGGATGAGCCTCTAGCCAGCTTTCAAACTGTG TACTTGTAG
Upstream 100 bases:
>100_bases GGATTCAGGCGCAAATGGCGCTGGTGCGCATTCCCGACCCGGGAACCGTGCCCCTGCCACCGCCACCTGAACCCACCGCG CCCCCCGAAGGAAACACACA
Downstream 100 bases:
>100_bases GCGCAACGTCAACTGGGGATTGCCAACAATACAAAAAAGGAACAGCTATGCGTGTTCATTACTTGTCTCATGTTCCGTTC GAGCAACTAGGCGCCATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 482; Mature: 482
Protein sequence:
>482_residues MKQYAVPFAALCFSGLALLGCSDNDNNQPSSAGSDSNSTDGIAGVWQSDQQVLVLEANGDLYLPADTNLQGLRWEQQEDN FTFHYLDNREKKVTEATASGQQQDDLLTLTPTTSSPSNLKEANSENTNENTEESGSDIDEETDNASSSPLFSGDYQRANL AVAHISGTATRPQNSELPDNAVLTVALLDNQINTSDPTAQLISKRLIRLDEDKTDEPFRLYYLPEDLKTDHEYQIISQIV ADGGLFYQSDAVTLKGNKQGFADIILPLNEVMTDSETLRGAITRGKPGQHRDIFTLCNSDQQLLIRGPQSGDLLSAYDNA IRYPQQPRVAIVSGLVRKVPGQQANSTETALIVESFELETGMDNCQLPTAELINTRWQLTHLGEDRIILGNSAHVPTLTF NAEGNVKGHGSCNSLSGNYLLDDHQLALSDLATTRKACSTSVIEDLFFKAIKASDHFRIDGEWLTLFDEKDEPLASFQTV YL
Sequences:
>Translated_482_residues MKQYAVPFAALCFSGLALLGCSDNDNNQPSSAGSDSNSTDGIAGVWQSDQQVLVLEANGDLYLPADTNLQGLRWEQQEDN FTFHYLDNREKKVTEATASGQQQDDLLTLTPTTSSPSNLKEANSENTNENTEESGSDIDEETDNASSSPLFSGDYQRANL AVAHISGTATRPQNSELPDNAVLTVALLDNQINTSDPTAQLISKRLIRLDEDKTDEPFRLYYLPEDLKTDHEYQIISQIV ADGGLFYQSDAVTLKGNKQGFADIILPLNEVMTDSETLRGAITRGKPGQHRDIFTLCNSDQQLLIRGPQSGDLLSAYDNA IRYPQQPRVAIVSGLVRKVPGQQANSTETALIVESFELETGMDNCQLPTAELINTRWQLTHLGEDRIILGNSAHVPTLTF NAEGNVKGHGSCNSLSGNYLLDDHQLALSDLATTRKACSTSVIEDLFFKAIKASDHFRIDGEWLTLFDEKDEPLASFQTV YL >Mature_482_residues MKQYAVPFAALCFSGLALLGCSDNDNNQPSSAGSDSNSTDGIAGVWQSDQQVLVLEANGDLYLPADTNLQGLRWEQQEDN FTFHYLDNREKKVTEATASGQQQDDLLTLTPTTSSPSNLKEANSENTNENTEESGSDIDEETDNASSSPLFSGDYQRANL AVAHISGTATRPQNSELPDNAVLTVALLDNQINTSDPTAQLISKRLIRLDEDKTDEPFRLYYLPEDLKTDHEYQIISQIV ADGGLFYQSDAVTLKGNKQGFADIILPLNEVMTDSETLRGAITRGKPGQHRDIFTLCNSDQQLLIRGPQSGDLLSAYDNA IRYPQQPRVAIVSGLVRKVPGQQANSTETALIVESFELETGMDNCQLPTAELINTRWQLTHLGEDRIILGNSAHVPTLTF NAEGNVKGHGSCNSLSGNYLLDDHQLALSDLATTRKACSTSVIEDLFFKAIKASDHFRIDGEWLTLFDEKDEPLASFQTV YL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52917; Mature: 52917
Theoretical pI: Translated: 4.18; Mature: 4.18
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQYAVPFAALCFSGLALLGCSDNDNNQPSSAGSDSNSTDGIAGVWQSDQQVLVLEANGD CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC LYLPADTNLQGLRWEQQEDNFTFHYLDNREKKVTEATASGQQQDDLLTLTPTTSSPSNLK EEECCCCCCCCCEECCCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHH EANSENTNENTEESGSDIDEETDNASSSPLFSGDYQRANLAVAHISGTATRPQNSELPDN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC AVLTVALLDNQINTSDPTAQLISKRLIRLDEDKTDEPFRLYYLPEDLKTDHEYQIISQIV CEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHH ADGGLFYQSDAVTLKGNKQGFADIILPLNEVMTDSETLRGAITRGKPGQHRDIFTLCNSD HCCCEEEECCEEEEECCCCCCHHHEEEHHHHHCCCHHHHHHHCCCCCCCCCCEEEEECCC QQLLIRGPQSGDLLSAYDNAIRYPQQPRVAIVSGLVRKVPGQQANSTETALIVESFELET CEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCC GMDNCQLPTAELINTRWQLTHLGEDRIILGNSAHVPTLTFNAEGNVKGHGSCNSLSGNYL CCCCCCCCHHHHHCCEEEEEECCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEE LDDHQLALSDLATTRKACSTSVIEDLFFKAIKASDHFRIDGEWLTLFDEKDEPLASFQTV ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCHHHEEEE YL CC >Mature Secondary Structure MKQYAVPFAALCFSGLALLGCSDNDNNQPSSAGSDSNSTDGIAGVWQSDQQVLVLEANGD CCCCCCHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCC LYLPADTNLQGLRWEQQEDNFTFHYLDNREKKVTEATASGQQQDDLLTLTPTTSSPSNLK EEECCCCCCCCCEECCCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHH EANSENTNENTEESGSDIDEETDNASSSPLFSGDYQRANLAVAHISGTATRPQNSELPDN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC AVLTVALLDNQINTSDPTAQLISKRLIRLDEDKTDEPFRLYYLPEDLKTDHEYQIISQIV CEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHCCCHHHHHHHHHH ADGGLFYQSDAVTLKGNKQGFADIILPLNEVMTDSETLRGAITRGKPGQHRDIFTLCNSD HCCCEEEECCEEEEECCCCCCHHHEEEHHHHHCCCHHHHHHHCCCCCCCCCCEEEEECCC QQLLIRGPQSGDLLSAYDNAIRYPQQPRVAIVSGLVRKVPGQQANSTETALIVESFELET CEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCC GMDNCQLPTAELINTRWQLTHLGEDRIILGNSAHVPTLTFNAEGNVKGHGSCNSLSGNYL CCCCCCCCHHHHHCCEEEEEECCCCEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCEE LDDHQLALSDLATTRKACSTSVIEDLFFKAIKASDHFRIDGEWLTLFDEKDEPLASFQTV ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCHHHEEEE YL CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA