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The map label for this gene is ydiU [C]

Identifier: 110835285

GI number: 110835285

Start: 2743740

End: 2745194

Strand: Direct

Name: ydiU [C]

Synonym: ABO_2424

Alternate gene names: 110835285

Gene position: 2743740-2745194 (Clockwise)

Preceding gene: 110835284

Following gene: 110835289

Centisome position: 87.94

GC content: 58.21

Gene sequence:

>1455_bases
ATGCCAAGCGCGTTCGGCTTCCGTTTCGACAACACCTACCGTCGGCTGCCCGAGGCCCTATTCTCAGATTGCCTCCCGCA
ACCGGTCAGTACACCCGCCTTTGTCTTGTTCAACGATAATCTAGCCCAAGAGCTGGGGCTGGATAGCGAAGCCCTGTCGG
AGCACCCCGAATTTTTCAGTGGCAATGAATTACTGGCAGGCAGTGAACCCATCGCCCAGGCTTATGCGGGCCACCAGTTT
GGCAGCCTGACCATGCTCGGCGATGGCCGCGCTGTTCTGCTGGGTGAGCAGCTGGATGGCCACGGGCAACGCCATGACAT
CCAGCTTAAAGGCGCCGGCCGCACTCCTTTTTCCCGAGGTGGCGATGGCCGTGCAGCCCTTGGCCCCATGTTGCGCGAAT
ACATTGTCAGCGAAGCGCTCCACGCGCTGAATATTGCTACCACTCGCAGCCTGGCCGTTACCCGCACCGGCGACAGAGTG
CGCCGGGACACCCTGCTTCCCGGGGCCATCCTGACCCGGGTGGCGGCATCACATATTCGTGTCGGCACCTTCCAGTACGC
CGCCGGACAACAAGACCCTGTGTTGCTGGAAAAACTGGTGGATTACACCATCGCGCGCCATTACCCCGCCTTGGAAGGGG
CAGAGAATAAAGCCTTGGCTCTATTCGAAGCCGTGATGGATCGGCAAATAGACTTGGTGGTCGACTGGATGCGGGTAGGT
TTTATTCACGGTGTGCTCAACACCGACAACGTAACCCTATCCGGCGAGAGTATCGATTTTGGCCCTTGTGCTTTTATGGA
TCGCTTTGACCCGAACACGGTGTTCAGCTCCATCGACCACCAGGGCCGCTATGCCTATGGTAACCAACCCAGCATTACCC
AGTGGAACCTGGGCCGCTTTGCGGAAACGCTGCTCAGAATGATGGACGACAACACAGACATCGCGATCGAAAAAGCCACC
ACATCACTAAAATCATTTAGCCTGCGTTACGAAGAAAAGTGGCGCGCCATGATGAACAAGAAGCTGGGGTTGTTCGGCAG
CGAAACCGAGGACGATACGCTGATTGCCGATTTGCTCACCTGGATGCATGCGCAGAACGCGGACTACACCAATACCTTCC
GTGATCTAATCCAGGACGGCCTGCCTGATGGCGAGCAATACCAAAGCGAAGCGTTCCAGCACTGGCACCAACGGTGGCGG
GCTCGGCTGGCCCGCAACAGCAAACCACTGGCCTCATCGTTGTGCCTGATGCGTAATCACAACCCGGCGGTGATTCCACG
CAACCACTTGGTGGAGCAAGCCCTCCAGGCGGCCAGCGAGGATAACGATATGACACCCACCCATGCCTTGCTGCAAGCAC
TCTCCGCCCCCTATGCGGACCGGGACAGTGATGACCGTTATCGGCAACCCGCCGCACCCTGCGAGCAAGTCCACCAGACT
TTTTGTGGCACCTGA

Upstream 100 bases:

>100_bases
CTACAGGCTGGGCGAACGACCAAATCGGCAAGGTCTCCCGTCCGTACAGACTCTGATACTCTGTAGGCGACCACATTACT
GCCACCATTCAGGATATTGC

Downstream 100 bases:

>100_bases
ACGAGGCAGCGTCTTAGCATTCTGTCGGATTACAGCTGAGCGTAATCCGACATTCAGCGCTCGATGAACACCATCAGCCC
TGCACTTTGTCCTGCGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MPSAFGFRFDNTYRRLPEALFSDCLPQPVSTPAFVLFNDNLAQELGLDSEALSEHPEFFSGNELLAGSEPIAQAYAGHQF
GSLTMLGDGRAVLLGEQLDGHGQRHDIQLKGAGRTPFSRGGDGRAALGPMLREYIVSEALHALNIATTRSLAVTRTGDRV
RRDTLLPGAILTRVAASHIRVGTFQYAAGQQDPVLLEKLVDYTIARHYPALEGAENKALALFEAVMDRQIDLVVDWMRVG
FIHGVLNTDNVTLSGESIDFGPCAFMDRFDPNTVFSSIDHQGRYAYGNQPSITQWNLGRFAETLLRMMDDNTDIAIEKAT
TSLKSFSLRYEEKWRAMMNKKLGLFGSETEDDTLIADLLTWMHAQNADYTNTFRDLIQDGLPDGEQYQSEAFQHWHQRWR
ARLARNSKPLASSLCLMRNHNPAVIPRNHLVEQALQAASEDNDMTPTHALLQALSAPYADRDSDDRYRQPAAPCEQVHQT
FCGT

Sequences:

>Translated_484_residues
MPSAFGFRFDNTYRRLPEALFSDCLPQPVSTPAFVLFNDNLAQELGLDSEALSEHPEFFSGNELLAGSEPIAQAYAGHQF
GSLTMLGDGRAVLLGEQLDGHGQRHDIQLKGAGRTPFSRGGDGRAALGPMLREYIVSEALHALNIATTRSLAVTRTGDRV
RRDTLLPGAILTRVAASHIRVGTFQYAAGQQDPVLLEKLVDYTIARHYPALEGAENKALALFEAVMDRQIDLVVDWMRVG
FIHGVLNTDNVTLSGESIDFGPCAFMDRFDPNTVFSSIDHQGRYAYGNQPSITQWNLGRFAETLLRMMDDNTDIAIEKAT
TSLKSFSLRYEEKWRAMMNKKLGLFGSETEDDTLIADLLTWMHAQNADYTNTFRDLIQDGLPDGEQYQSEAFQHWHQRWR
ARLARNSKPLASSLCLMRNHNPAVIPRNHLVEQALQAASEDNDMTPTHALLQALSAPYADRDSDDRYRQPAAPCEQVHQT
FCGT
>Mature_483_residues
PSAFGFRFDNTYRRLPEALFSDCLPQPVSTPAFVLFNDNLAQELGLDSEALSEHPEFFSGNELLAGSEPIAQAYAGHQFG
SLTMLGDGRAVLLGEQLDGHGQRHDIQLKGAGRTPFSRGGDGRAALGPMLREYIVSEALHALNIATTRSLAVTRTGDRVR
RDTLLPGAILTRVAASHIRVGTFQYAAGQQDPVLLEKLVDYTIARHYPALEGAENKALALFEAVMDRQIDLVVDWMRVGF
IHGVLNTDNVTLSGESIDFGPCAFMDRFDPNTVFSSIDHQGRYAYGNQPSITQWNLGRFAETLLRMMDDNTDIAIEKATT
SLKSFSLRYEEKWRAMMNKKLGLFGSETEDDTLIADLLTWMHAQNADYTNTFRDLIQDGLPDGEQYQSEAFQHWHQRWRA
RLARNSKPLASSLCLMRNHNPAVIPRNHLVEQALQAASEDNDMTPTHALLQALSAPYADRDSDDRYRQPAAPCEQVHQTF
CGT

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=392, Percent_Identity=37.7551020408163, Blast_Score=249, Evalue=6e-66,
Organism=Escherichia coli, GI1787999, Length=467, Percent_Identity=37.9014989293362, Blast_Score=309, Evalue=3e-85,
Organism=Saccharomyces cerevisiae, GI6325034, Length=449, Percent_Identity=29.6213808463252, Blast_Score=165, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2424_ALCBS (Q0VLS6)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_694144.1
- STRING:   Q0VLS6
- GeneID:   4213083
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2424
- NMPDR:   fig|393595.12.peg.2424
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   RRDIQLK
- PhylomeDB:   Q0VLS6
- BioCyc:   ABOR393595:ABO_2424-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53977; Mature: 53846

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSAFGFRFDNTYRRLPEALFSDCLPQPVSTPAFVLFNDNLAQELGLDSEALSEHPEFFS
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCHHHHHCCCCCCC
GNELLAGSEPIAQAYAGHQFGSLTMLGDGRAVLLGEQLDGHGQRHDIQLKGAGRTPFSRG
CCEEECCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCC
GDGRAALGPMLREYIVSEALHALNIATTRSLAVTRTGDRVRRDTLLPGAILTRVAASHIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHE
VGTFQYAAGQQDPVLLEKLVDYTIARHYPALEGAENKALALFEAVMDRQIDLVVDWMRVG
ECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
FIHGVLNTDNVTLSGESIDFGPCAFMDRFDPNTVFSSIDHQGRYAYGNQPSITQWNLGRF
HHHHEECCCCEEECCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
AETLLRMMDDNTDIAIEKATTSLKSFSLRYEEKWRAMMNKKLGLFGSETEDDTLIADLLT
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
WMHAQNADYTNTFRDLIQDGLPDGEQYQSEAFQHWHQRWRARLARNSKPLASSLCLMRNH
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
NPAVIPRNHLVEQALQAASEDNDMTPTHALLQALSAPYADRDSDDRYRQPAAPCEQVHQT
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHH
FCGT
HCCC
>Mature Secondary Structure 
PSAFGFRFDNTYRRLPEALFSDCLPQPVSTPAFVLFNDNLAQELGLDSEALSEHPEFFS
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHCCCHHHHHCCCCCCC
GNELLAGSEPIAQAYAGHQFGSLTMLGDGRAVLLGEQLDGHGQRHDIQLKGAGRTPFSRG
CCEEECCCCHHHHHHCCCCCCCEEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCC
GDGRAALGPMLREYIVSEALHALNIATTRSLAVTRTGDRVRRDTLLPGAILTRVAASHIR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHCCCHHHHHHHHHHHHE
VGTFQYAAGQQDPVLLEKLVDYTIARHYPALEGAENKALALFEAVMDRQIDLVVDWMRVG
ECEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHH
FIHGVLNTDNVTLSGESIDFGPCAFMDRFDPNTVFSSIDHQGRYAYGNQPSITQWNLGRF
HHHHEECCCCEEECCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
AETLLRMMDDNTDIAIEKATTSLKSFSLRYEEKWRAMMNKKLGLFGSETEDDTLIADLLT
HHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
WMHAQNADYTNTFRDLIQDGLPDGEQYQSEAFQHWHQRWRARLARNSKPLASSLCLMRNH
HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCC
NPAVIPRNHLVEQALQAASEDNDMTPTHALLQALSAPYADRDSDDRYRQPAAPCEQVHQT
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHHHHH
FCGT
HCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA