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The map label for this gene is nusB

Identifier: 110835031

GI number: 110835031

Start: 2479925

End: 2480377

Strand: Reverse

Name: nusB

Synonym: ABO_2170

Alternate gene names: 110835031

Gene position: 2480377-2479925 (Counterclockwise)

Preceding gene: 110835032

Following gene: 110835030

Centisome position: 79.5

GC content: 54.3

Gene sequence:

>453_bases
ATGAACAATCCATCTACACCCAGTGCCCGTCGCAAGGCACGTCGTTTCACTCTTCAGGCCCTGTACCAGTGGCAGTTGGC
CGGTGCCGCGGTGAGCGACATTGAAGCCCAGTTTCTGGCCAATCAGGACTTCGCCAAGGTGGATCGTGAATACTTTCATG
ATTTGCTGCACGGAGTGCTGGGCCAGGTAAAAACGCTGGACGAGCAGCTCACGCCATATCTGGATCGGCGTGTAGAGGAG
CTGTCGCAGGTGGAAAAAGCGATTCTGCGGCTGGGCGCTTTTGAATTAAAAGAGCGTCAAGATGTGCCTTACCGAGTGGT
GATTAACGAAGGCATTGAGCTGGCTAAAGTTTTTGGCGCAGAGGATTCCTTCAAATACGTGAATGGCGTGCTCGACAAGC
TGGCACGCCAATTGCGCTATGCAGAAGCATCAGAACGCCGCCCCCGTGACTGA

Upstream 100 bases:

>100_bases
AGAAGCCGCCCTGTGCGCACTAGAAATGGTGTCGCTGTTTAACGCCCTATAATGCCAGGGGCGCAGCGCCCCGGCATCGC
TTTTCGTTATCCGAGGTCGC

Downstream 100 bases:

>100_bases
TCTGCTTTGATAATGTCGGCTTGCCGTGCGTTCTGCCGGTAAGCCGCGTTATGCTTCCCGCCATGACTGATCCCGCCGAT
TCACCGCAACCCACTTCGCA

Product: transcriptional terminator nusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNNPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVLGQVKTLDEQLTPYLDRRVEE
LSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSFKYVNGVLDKLARQLRYAEASERRPRD

Sequences:

>Translated_150_residues
MNNPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVLGQVKTLDEQLTPYLDRRVEE
LSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSFKYVNGVLDKLARQLRYAEASERRPRD
>Mature_150_residues
MNNPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVLGQVKTLDEQLTPYLDRRVEE
LSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGAEDSFKYVNGVLDKLARQLRYAEASERRPRD

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=133, Percent_Identity=57.8947368421053, Blast_Score=142, Evalue=8e-36,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_ALCBS (Q0VMI0)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693890.1
- ProteinModelPortal:   Q0VMI0
- SMR:   Q0VMI0
- STRING:   Q0VMI0
- GeneID:   4211620
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_2170
- NMPDR:   fig|393595.12.peg.2170
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   Q0VMI0
- BioCyc:   ABOR393595:ABO_2170-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17297; Mature: 17297

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GQVKTLDEQLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
EDSFKYVNGVLDKLARQLRYAEASERRPRD
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNNPSTPSARRKARRFTLQALYQWQLAGAAVSDIEAQFLANQDFAKVDREYFHDLLHGVL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
GQVKTLDEQLTPYLDRRVEELSQVEKAILRLGAFELKERQDVPYRVVINEGIELAKVFGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
EDSFKYVNGVLDKLARQLRYAEASERRPRD
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA