Click here to switch to the map view.

The map label for this gene is tnpB [H]

Identifier: 110834942

GI number: 110834942

Start: 2368353

End: 2369225

Strand: Reverse

Name: tnpB [H]

Synonym: ABO_2081

Alternate gene names: 110834942

Gene position: 2369225-2368353 (Counterclockwise)

Preceding gene: 110834943

Following gene: 110834941

Centisome position: 75.93

GC content: 55.21

Gene sequence:

>873_bases
TTGAGGTACGCCTTCATTCAGGAGCACAGCGAGCGGTGGGCAATTCGCTCACTGTGTTCCCTGTTGGACGTTCACCCCAG
TGGCTTTTATGCCTGGCAGAAACAGCCTCGTTCAGCTCGAGCAATCGAGGACGAGCGCCTGTCCGGGCTGATAAAGCAAT
TCTGGTTGGAATCTGGAGCCGTGTATGGCTACAGGAAGATCCACACGGATCTACGCGAGTATGGCGAGCGCTGCGGGCCC
AATCGAGTCCATCGCCTGATGCGCCACGCGGGAATACGAGCGCAGGTTGGTTACCGTAAGCCACGCCATAGGGCCGGGGA
GCTACACAAAGTGACACCGAATATCCTGCAGCGGCAGTTCAATCCGCAAGCGCCGAACGAGAGCTGGGTAACGGATATTA
CCTATATCCGCACACATGAAGGCTGGTTGTATCTGGCGGTTGTTCTGGATCTGTTCTCAAGACGGGTGATCGGTTGGTCA
ATGCAATCCCGGATAACCAAGGAGCTGGCGCTGGATGCGCTGCTGATGGCGGTCTGGCGCCGCAAGCCTGAAGGCAAGGT
GGTTGTTCACTCCGACCAAGGCAGTCAATACACCAGCCACGACTGGGATTCGTTTCTGAGGGCGCATGACCTGGAGGGGA
GTATGAGTCGGCGCGGTAACTGCCACGACAATGCTGTTGCTGAGAGCTTCTTCCAGCTGTTGAAGCGGGAAAGAATAAAG
CGAAAGATTTACAGCAGCCGTGACGCCGCTCGGGCAGATATTTTTGATTATATCGAGATGTTCTATAACAACCGGCGGCG
CCATGGTTCTAATGAAAAGCTGTCACCGGTAGAGTATGAAAAGCGTCACCAAGAACGGCTGGGAAGTGTCTAG

Upstream 100 bases:

>100_bases
ATCAAGTCGAGATTCGCCGACTCCAGAAAGAGCTCAAGCGCGTTACCGAAGAGCGAGACATCCTAAAAAAAGCCGCGGCG
TACTTCGCCAGTCAGTCCGA

Downstream 100 bases:

>100_bases
AGAACTGGTGGCGATTCAAACGTAACCCCAGTGTAACCCTGACAAATGCTGACTTTTTGATCTGTTGTGAGCTTGAAACG
GGAAGTGAATAGGTAGAAGG

Product: transposase subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGAVYGYRKIHTDLREYGERCGP
NRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQFNPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWS
MQSRITKELALDALLMAVWRRKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV

Sequences:

>Translated_290_residues
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGAVYGYRKIHTDLREYGERCGP
NRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQFNPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWS
MQSRITKELALDALLMAVWRRKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV
>Mature_290_residues
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGAVYGYRKIHTDLREYGERCGP
NRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQFNPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWS
MQSRITKELALDALLMAVWRRKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=242, Percent_Identity=35.5371900826446, Blast_Score=152, Evalue=4e-37,
Organism=Escherichia coli, GI1788405, Length=287, Percent_Identity=42.5087108013937, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1787263, Length=287, Percent_Identity=42.5087108013937, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1786753, Length=287, Percent_Identity=42.5087108013937, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1786570, Length=287, Percent_Identity=42.5087108013937, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1786490, Length=287, Percent_Identity=42.5087108013937, Blast_Score=221, Evalue=6e-59,
Organism=Escherichia coli, GI1789981, Length=229, Percent_Identity=36.2445414847162, Blast_Score=151, Evalue=6e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 34268; Mature: 34268

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
VYGYRKIHTDLREYGERCGPNRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCCHHCCCHHCCCHHHHHHCC
NPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWSMQSRITKELALDALLMAVWR
CCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
CCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYAFIQEHSERWAIRSLCSLLDVHPSGFYAWQKQPRSARAIEDERLSGLIKQFWLESGA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
VYGYRKIHTDLREYGERCGPNRVHRLMRHAGIRAQVGYRKPRHRAGELHKVTPNILQRQF
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEECCCCCCCHHCCCHHCCCHHHHHHCC
NPQAPNESWVTDITYIRTHEGWLYLAVVLDLFSRRVIGWSMQSRITKELALDALLMAVWR
CCCCCCCCHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RKPEGKVVVHSDQGSQYTSHDWDSFLRAHDLEGSMSRRGNCHDNAVAESFFQLLKRERIK
CCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHH
RKIYSSRDAARADIFDYIEMFYNNRRRHGSNEKLSPVEYEKRHQERLGSV
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]