| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is dat [H]
Identifier: 110834821
GI number: 110834821
Start: 2241081
End: 2241965
Strand: Direct
Name: dat [H]
Synonym: ABO_1960
Alternate gene names: 110834821
Gene position: 2241081-2241965 (Clockwise)
Preceding gene: 110834820
Following gene: 110834822
Centisome position: 71.83
GC content: 57.4
Gene sequence:
>885_bases ATGACTCAGGTTTATCTCAACGGCGCCTTCATGGCGCCAGCAGATGCAACGATATCCCCCATGGATCGGGGCTTTCTGTT TGCCGACGGGATTTACGAAGTGATACCAGCCTATAACGGCGTATTATTCCGCTTCGAAGAACACCTGATCCGCCTGGAAC GCTCGCTGGCAGAAGTCGACATTCGCAATCCCCACAGCCGGGCACAGTGGCGAGAACGATGTGAACAACTACTGCGCGCC AATGGCGGCGGCAATCTCTCGGTTTACCTGCAAGTCACCCGTGGCGCTGCTGAAAAGCGCGATCATGCGTTCCCGTCGCC CGCCGTCACCCCCACTGTATTCATGATGACCAACCCGATAGCGATTCCTGCCGCCGACAGCCCAGAAACCGCCGTTGGCG CTCGCGCAATCACCCTGGATGATATTCGCTGGGCCCGTTGCGATATTAAGTCCGTCTCCTTGCTGCCCAACAGCCTACTC CGCCAACAAGCCGTGGCCGCCGGGGCCAGCGAAGCCATTTTGCTGCGCGACGGCTTTGTTACCGAAGGCTCGGCCAGCAA TGTCTTCATCGCCAAGGCCGGCACCATTGCGACCCCCCCAAAAAGCCATGCCATTCTTGGCGGCATTACCCGGGATCTGG TGGTAGAGCTGTGCCACCAGCACGGCCTCGCACTAGAAGAGCGTGAAATCACTGAAATGCAGTTACGCCAAGCAGATGAA ATCTGGATCACCAGTTCGACCAAGGAAGTGGTGCCCGTAATTCAGCTCAACAACGCTATAATAGGGAATGGAATGCCGGG GCCATTATGGAAAGCCCTTGCGCATCACTACGTCCAGCATAAACGCCGACTTTGCGGGCTTGATGCCCCAAACGCGCACG ACTGA
Upstream 100 bases:
>100_bases GAAGAAGCTGGCCTCTTCACCAAGCTTTGGCATCACCTTATGCTGTTCTTCAAAGGGCTGTTCTAGGAACCTCAGCACGC GACACGCAGGCACACTTACC
Downstream 100 bases:
>100_bases CAGGAGCCGCCCATGGCCATTCAGGAACATTTGTGGGAATTCCCCCATGACATGCAGTTAAAAGTCATGGGGGCCATCGA CTCCCCCCTTGAAGCCGCGC
Product: d-alanine aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTQVYLNGAFMAPADATISPMDRGFLFADGIYEVIPAYNGVLFRFEEHLIRLERSLAEVDIRNPHSRAQWRERCEQLLRA NGGGNLSVYLQVTRGAAEKRDHAFPSPAVTPTVFMMTNPIAIPAADSPETAVGARAITLDDIRWARCDIKSVSLLPNSLL RQQAVAAGASEAILLRDGFVTEGSASNVFIAKAGTIATPPKSHAILGGITRDLVVELCHQHGLALEEREITEMQLRQADE IWITSSTKEVVPVIQLNNAIIGNGMPGPLWKALAHHYVQHKRRLCGLDAPNAHD
Sequences:
>Translated_294_residues MTQVYLNGAFMAPADATISPMDRGFLFADGIYEVIPAYNGVLFRFEEHLIRLERSLAEVDIRNPHSRAQWRERCEQLLRA NGGGNLSVYLQVTRGAAEKRDHAFPSPAVTPTVFMMTNPIAIPAADSPETAVGARAITLDDIRWARCDIKSVSLLPNSLL RQQAVAAGASEAILLRDGFVTEGSASNVFIAKAGTIATPPKSHAILGGITRDLVVELCHQHGLALEEREITEMQLRQADE IWITSSTKEVVPVIQLNNAIIGNGMPGPLWKALAHHYVQHKRRLCGLDAPNAHD >Mature_293_residues TQVYLNGAFMAPADATISPMDRGFLFADGIYEVIPAYNGVLFRFEEHLIRLERSLAEVDIRNPHSRAQWRERCEQLLRAN GGGNLSVYLQVTRGAAEKRDHAFPSPAVTPTVFMMTNPIAIPAADSPETAVGARAITLDDIRWARCDIKSVSLLPNSLLR QQAVAAGASEAILLRDGFVTEGSASNVFIAKAGTIATPPKSHAILGGITRDLVVELCHQHGLALEEREITEMQLRQADEI WITSSTKEVVPVIQLNNAIIGNGMPGPLWKALAHHYVQHKRRLCGLDAPNAHD
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=289, Percent_Identity=24.9134948096886, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 32170; Mature: 32039
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00770 AA_TRANSFER_CLASS_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQVYLNGAFMAPADATISPMDRGFLFADGIYEVIPAYNGVLFRFEEHLIRLERSLAEVD CCEEEEECEEECCCCCCCCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC IRNPHSRAQWRERCEQLLRANGGGNLSVYLQVTRGAAEKRDHAFPSPAVTPTVFMMTNPI CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCCCCCCCCCCEEEEEECCE AIPAADSPETAVGARAITLDDIRWARCDIKSVSLLPNSLLRQQAVAAGASEAILLRDGFV EECCCCCCCHHHCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC TEGSASNVFIAKAGTIATPPKSHAILGGITRDLVVELCHQHGLALEEREITEMQLRQADE CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC IWITSSTKEVVPVIQLNNAIIGNGMPGPLWKALAHHYVQHKRRLCGLDAPNAHD EEEECCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TQVYLNGAFMAPADATISPMDRGFLFADGIYEVIPAYNGVLFRFEEHLIRLERSLAEVD CEEEEECEEECCCCCCCCCCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC IRNPHSRAQWRERCEQLLRANGGGNLSVYLQVTRGAAEKRDHAFPSPAVTPTVFMMTNPI CCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHCCCCCCCCCCCEEEEEECCE AIPAADSPETAVGARAITLDDIRWARCDIKSVSLLPNSLLRQQAVAAGASEAILLRDGFV EECCCCCCCHHHCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC TEGSASNVFIAKAGTIATPPKSHAILGGITRDLVVELCHQHGLALEEREITEMQLRQADE CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC IWITSSTKEVVPVIQLNNAIIGNGMPGPLWKALAHHYVQHKRRLCGLDAPNAHD EEEECCCCCEEEEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9003455 [H]