| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834768
Identifier: 110834768
GI number: 110834768
Start: 2184107
End: 2184562
Strand: Direct
Name: 110834768
Synonym: ABO_1907
Alternate gene names: NA
Gene position: 2184107-2184562 (Clockwise)
Preceding gene: 110834767
Following gene: 110834769
Centisome position: 70.0
GC content: 53.07
Gene sequence:
>456_bases ATGGCAACCCGCAGCATGAATGACTGGCTCAACGCCTATGGCGAAAGCCACCAAAACCCTACCAACAAGAAAGTACACTT CCTATGCGTGCCGGTGATCTTCTTTACCATCGTCGGCTTTCTCTGGGCTCTTCCCGCCCCCCTGTTCACAGGGTTCTGGG CATGCTTAGCACTGGTCTTCGTCACACTCTACTACGCCCGCCTATCCATACCCATTGCTGTGGGCATGCTGGCTTTTAGC TTGCTCTGTCTGGCCGGCCTCAGTCTCATCGCTGCCGCCGGCATTAGCGTCTGGCTGTTCTCACTAGTGGTCTTCATTCT CGCCTGGATTGGCCAATTCTGGGGCCATAAAGTTGAGGGCCAAAAACCCTCGTTTTTCGAAGACATCCAGTATCTGATGA TCGGCCCAGCTTGGATCATGGGCTTCCTCTATCGAAAATGGGGAATCAAGTATTAA
Upstream 100 bases:
>100_bases ATGAGGCACACATAAGCCAAGGTGCCGGAGCCCAGAGGAGGCACCGGCGCCCTGCCGCGCTATACTCTTCCCCATAGAAT ACCAACTAGGGGAAAACAAC
Downstream 100 bases:
>100_bases TTTCTTCCTGTAAGAGCTTAACGGCAAACGTCTGCAGCAAATCAAAGCCAACGCCTTTCCACTCTACGACTTTTGCAGTA GGTTATAGGCTAACAACAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 151; Mature: 150
Protein sequence:
>151_residues MATRSMNDWLNAYGESHQNPTNKKVHFLCVPVIFFTIVGFLWALPAPLFTGFWACLALVFVTLYYARLSIPIAVGMLAFS LLCLAGLSLIAAAGISVWLFSLVVFILAWIGQFWGHKVEGQKPSFFEDIQYLMIGPAWIMGFLYRKWGIKY
Sequences:
>Translated_151_residues MATRSMNDWLNAYGESHQNPTNKKVHFLCVPVIFFTIVGFLWALPAPLFTGFWACLALVFVTLYYARLSIPIAVGMLAFS LLCLAGLSLIAAAGISVWLFSLVVFILAWIGQFWGHKVEGQKPSFFEDIQYLMIGPAWIMGFLYRKWGIKY >Mature_150_residues ATRSMNDWLNAYGESHQNPTNKKVHFLCVPVIFFTIVGFLWALPAPLFTGFWACLALVFVTLYYARLSIPIAVGMLAFSL LCLAGLSLIAAAGISVWLFSLVVFILAWIGQFWGHKVEGQKPSFFEDIQYLMIGPAWIMGFLYRKWGIKY
Specific function: Unknown
COG id: COG4539
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17093; Mature: 16961
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATRSMNDWLNAYGESHQNPTNKKVHFLCVPVIFFTIVGFLWALPAPLFTGFWACLALVF CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTLYYARLSIPIAVGMLAFSLLCLAGLSLIAAAGISVWLFSLVVFILAWIGQFWGHKVEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QKPSFFEDIQYLMIGPAWIMGFLYRKWGIKY CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ATRSMNDWLNAYGESHQNPTNKKVHFLCVPVIFFTIVGFLWALPAPLFTGFWACLALVF CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VTLYYARLSIPIAVGMLAFSLLCLAGLSLIAAAGISVWLFSLVVFILAWIGQFWGHKVEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC QKPSFFEDIQYLMIGPAWIMGFLYRKWGIKY CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA