| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is gpm [H]
Identifier: 110834630
GI number: 110834630
Start: 2016170
End: 2016916
Strand: Direct
Name: gpm [H]
Synonym: ABO_1769
Alternate gene names: 110834630
Gene position: 2016170-2016916 (Clockwise)
Preceding gene: 110834624
Following gene: 110834631
Centisome position: 64.62
GC content: 50.87
Gene sequence:
>747_bases ATGAGCACGAAACTGGTACTGGTCCGCCACGGCCAGAGCGTATGGAACAAGGAAAATCGCTTCACAGGCTGGAAAGATGT TGATCTTACCGAGCAAGGCCGCGAAGAAGCCCGCACCGCAGGCGAACTACTGAAAGAGGCCGGGTTTGAATTTGACCTGG CTTATACCTCGGTGCTCAAGCGTGCGATCCGCACCCTGTGGAGCATTCTGGATAACATGGACCAGATGTGGATCCCTGTT ATCCGTGACTACCGCTTGAATGAACGCCACTACGGTGCCTTGCAGGGTTTGAATAAAGCGGAAACAGCCGCCAAATATGG CGACGACCAGGTACATATATGGCGCCGTAGCTACGATACGCCGCCACCGAAAATGGAACGTGACGATGAGCGCTACGCTG GCAACTTCCGAGTGTACAAGGACTTGAGTGAAGCTCAAATTCCTTTGTCAGAAAGTCTTAAAGACACGGTGGACCGTTTT ATTCCTTACTTCGAAAGTGATATCAAACCGCAAATTCAAGCTGGGAAACAGGTTTTAATCTGCGCCCATGGCAATAGTCT GCGTGCGCTGGTGAAGTATCTCGGCGACATTTCTGACGAAGAAATCGTAAAGCTCAACATCCCTACTGGAGTGCCGATGG TTTATGAGCTGGACGACAATCTCAAACCCATTAAAAACTACTATTTGGGCGATGCCGAAGCTGCAGCGAAAGCGGCAGAA GCAGTCGCCAACCAAGGTAAGGCGTAA
Upstream 100 bases:
>100_bases ACAACAGAATTTGCGACGATTATACGGCCTGTGGCGCTCAATTTCCCGGCACATTTCTGCTACTCTTTGCGCCGCATTGA AATCGCACAGGATGACGCTA
Downstream 100 bases:
>100_bases GCAGGCAAGCTAGGAACCTGCCACAAAAAAGCCCCGCCAAACCCGGCGGGGCTTTTTTGTGCTTCATACCTTCGTCATCA TACAAGCATAGCTTCTCACA
Product: phosphoglycerate mutase
Products: NA
Alternate protein names: BPG-dependent PGAM; PGAM; Phosphoglyceromutase; dPGM [H]
Number of amino acids: Translated: 248; Mature: 247
Protein sequence:
>248_residues MSTKLVLVRHGQSVWNKENRFTGWKDVDLTEQGREEARTAGELLKEAGFEFDLAYTSVLKRAIRTLWSILDNMDQMWIPV IRDYRLNERHYGALQGLNKAETAAKYGDDQVHIWRRSYDTPPPKMERDDERYAGNFRVYKDLSEAQIPLSESLKDTVDRF IPYFESDIKPQIQAGKQVLICAHGNSLRALVKYLGDISDEEIVKLNIPTGVPMVYELDDNLKPIKNYYLGDAEAAAKAAE AVANQGKA
Sequences:
>Translated_248_residues MSTKLVLVRHGQSVWNKENRFTGWKDVDLTEQGREEARTAGELLKEAGFEFDLAYTSVLKRAIRTLWSILDNMDQMWIPV IRDYRLNERHYGALQGLNKAETAAKYGDDQVHIWRRSYDTPPPKMERDDERYAGNFRVYKDLSEAQIPLSESLKDTVDRF IPYFESDIKPQIQAGKQVLICAHGNSLRALVKYLGDISDEEIVKLNIPTGVPMVYELDDNLKPIKNYYLGDAEAAAKAAE AVANQGKA >Mature_247_residues STKLVLVRHGQSVWNKENRFTGWKDVDLTEQGREEARTAGELLKEAGFEFDLAYTSVLKRAIRTLWSILDNMDQMWIPVI RDYRLNERHYGALQGLNKAETAAKYGDDQVHIWRRSYDTPPPKMERDDERYAGNFRVYKDLSEAQIPLSESLKDTVDRFI PYFESDIKPQIQAGKQVLICAHGNSLRALVKYLGDISDEEIVKLNIPTGVPMVYELDDNLKPIKNYYLGDAEAAAKAAEA VANQGKA
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate [H]
COG id: COG0588
COG function: function code G; Phosphoglycerate mutase 1
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily [H]
Homologues:
Organism=Homo sapiens, GI50593010, Length=250, Percent_Identity=58.4, Blast_Score=310, Evalue=7e-85, Organism=Homo sapiens, GI4505753, Length=248, Percent_Identity=62.0967741935484, Blast_Score=306, Evalue=8e-84, Organism=Homo sapiens, GI71274132, Length=248, Percent_Identity=59.6774193548387, Blast_Score=293, Evalue=1e-79, Organism=Homo sapiens, GI4502445, Length=250, Percent_Identity=50, Blast_Score=256, Evalue=2e-68, Organism=Homo sapiens, GI40353764, Length=250, Percent_Identity=50, Blast_Score=256, Evalue=2e-68, Organism=Homo sapiens, GI310129614, Length=161, Percent_Identity=62.7329192546584, Blast_Score=203, Evalue=1e-52, Organism=Escherichia coli, GI1786970, Length=246, Percent_Identity=65.0406504065041, Blast_Score=335, Evalue=2e-93, Organism=Saccharomyces cerevisiae, GI6322697, Length=244, Percent_Identity=53.6885245901639, Blast_Score=243, Evalue=2e-65, Organism=Saccharomyces cerevisiae, GI6320183, Length=299, Percent_Identity=34.4481605351171, Blast_Score=149, Evalue=5e-37, Organism=Saccharomyces cerevisiae, GI6324516, Length=292, Percent_Identity=32.5342465753425, Blast_Score=139, Evalue=6e-34, Organism=Saccharomyces cerevisiae, GI6324857, Length=238, Percent_Identity=25.2100840336134, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24646216, Length=249, Percent_Identity=55.8232931726908, Blast_Score=278, Evalue=3e-75, Organism=Drosophila melanogaster, GI85725270, Length=249, Percent_Identity=54.2168674698795, Blast_Score=256, Evalue=1e-68, Organism=Drosophila melanogaster, GI85725272, Length=249, Percent_Identity=54.2168674698795, Blast_Score=256, Evalue=1e-68, Organism=Drosophila melanogaster, GI24650981, Length=249, Percent_Identity=54.2168674698795, Blast_Score=256, Evalue=1e-68, Organism=Drosophila melanogaster, GI28571817, Length=220, Percent_Identity=40.9090909090909, Blast_Score=178, Evalue=3e-45, Organism=Drosophila melanogaster, GI24648979, Length=220, Percent_Identity=40.9090909090909, Blast_Score=178, Evalue=3e-45, Organism=Drosophila melanogaster, GI28571815, Length=220, Percent_Identity=40.9090909090909, Blast_Score=178, Evalue=3e-45,
Paralogues:
None
Copy number: 960 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR005952 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 28300; Mature: 28169
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTKLVLVRHGQSVWNKENRFTGWKDVDLTEQGREEARTAGELLKEAGFEFDLAYTSVLK CCCEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH RAIRTLWSILDNMDQMWIPVIRDYRLNERHYGALQGLNKAETAAKYGDDQVHIWRRSYDT HHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCC PPPKMERDDERYAGNFRVYKDLSEAQIPLSESLKDTVDRFIPYFESDIKPQIQAGKQVLI CCCCCCCCCHHHCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEE CAHGNSLRALVKYLGDISDEEIVKLNIPTGVPMVYELDDNLKPIKNYYLGDAEAAAKAAE EECCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHH AVANQGKA HHHHCCCC >Mature Secondary Structure STKLVLVRHGQSVWNKENRFTGWKDVDLTEQGREEARTAGELLKEAGFEFDLAYTSVLK CCEEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH RAIRTLWSILDNMDQMWIPVIRDYRLNERHYGALQGLNKAETAAKYGDDQVHIWRRSYDT HHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHCCCCEEEEEECCCCC PPPKMERDDERYAGNFRVYKDLSEAQIPLSESLKDTVDRFIPYFESDIKPQIQAGKQVLI CCCCCCCCCHHHCCCCCEECCHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEE CAHGNSLRALVKYLGDISDEEIVKLNIPTGVPMVYELDDNLKPIKNYYLGDAEAAAKAAE EECCCHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCCCCHHHHHHCCCCHHHHHHHHH AVANQGKA HHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA