| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834621
Identifier: 110834621
GI number: 110834621
Start: 2007667
End: 2008695
Strand: Direct
Name: 110834621
Synonym: ABO_1760
Alternate gene names: NA
Gene position: 2007667-2008695 (Clockwise)
Preceding gene: 110834619
Following gene: 110834622
Centisome position: 64.35
GC content: 53.35
Gene sequence:
>1029_bases ATGGGTTCTCTTTCCATGAAAAAAATGCTACGACATTCCGGTCTGGCCTTGGTAGGAAGCGCCATCCTAGCTCTGCAAGG CTGCGGTGTTGTCTATAAGGCTACCGGTGATGTTTTGGTCAGCTTCGGCCGATCCGAAATGTTGCCCTACATGATGACCT ATGATGACGTACGTATGGCATGCGTCACCGGCGAAGCACAGACACCTCTGTTGATGTCTTTCGAGCGTGTTGGATCCGAC CCCAGCAAACTGGGCGCCATGGTCTTCACCGTTGCCGCCACCTGCGCCGAGCAAATTGCTCTTGATGCTGAACTGCGCTA CATGCGTTCAGTCAAAGATGGCCGAGTCAGCGAAGCACAAGATGCACGCATCGAGCAGAAACGCTGGTCTGCCATTGCCG CAAATCGCCAGTACAAAGCTTACAACTACATGATGCAAGCCTTCGGCGAAGTCAAGGACGGTGAATGTCCTAACATGAAT AACGATTTTGACGAAATGGTCTGGCTGGTCGGTAACATTTCCGGTGTTCAATCCCTGCTTAACGACGGCGCTTCCGACGG TGCAGTAGGCGTACCTCGTGATATCGCAGCCAAAGTTGAACGCAACATGAAATGCTTGGATAACGATCAGTGGTGGGGCG TACCGCGCGGTACCCGTGCTGCAGTATGGAACCTGCTACCAATGCTAGCACCACCGAACGCTGATGCATGGGCCGAGCTG GAAGCCTCAGCCAAGGCAGGGTTCGACAGCGGCATTCGTTTGGGCAGCGCCCTGTATGCCATGAGCGCTTTCAGCAAAGG CAACGATGAGCGTCTGCGCCAAGCCATCCGTGATTACGCAGCAAATGATGAAGGCCTGAATCCAGACTACGCTATGCTAG ACGCCATCGCTGGCTTTATTATCCAAGGTATTTCGGACCGTGAATGGACTGAGAATACCGGTAAGCGTACACCTATAGGC GGCACTGGCACTTTCTGGGATGACACAGCCTCGTCTGGCCCCGCTATTGATATCAACGATTTGCTATAA
Upstream 100 bases:
>100_bases AATTGCTTGAAGGATTTTTTGTAATTGCCGCTTGTGTCAAACGGCTGACTTTCGTACCTTTGACGACCCTATTTTGAGAA CAAAAACAAGGAGCTTACGA
Downstream 100 bases:
>100_bases GCCATCTAGCGGCCTTCGGGCCGCTTTTAACGCGTTAAACAGTTAAAGAAGTAACCAGGAGACTATCATGCGCTATGTTA AGGCATTCACTGCGGTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MGSLSMKKMLRHSGLALVGSAILALQGCGVVYKATGDVLVSFGRSEMLPYMMTYDDVRMACVTGEAQTPLLMSFERVGSD PSKLGAMVFTVAATCAEQIALDAELRYMRSVKDGRVSEAQDARIEQKRWSAIAANRQYKAYNYMMQAFGEVKDGECPNMN NDFDEMVWLVGNISGVQSLLNDGASDGAVGVPRDIAAKVERNMKCLDNDQWWGVPRGTRAAVWNLLPMLAPPNADAWAEL EASAKAGFDSGIRLGSALYAMSAFSKGNDERLRQAIRDYAANDEGLNPDYAMLDAIAGFIIQGISDREWTENTGKRTPIG GTGTFWDDTASSGPAIDINDLL
Sequences:
>Translated_342_residues MGSLSMKKMLRHSGLALVGSAILALQGCGVVYKATGDVLVSFGRSEMLPYMMTYDDVRMACVTGEAQTPLLMSFERVGSD PSKLGAMVFTVAATCAEQIALDAELRYMRSVKDGRVSEAQDARIEQKRWSAIAANRQYKAYNYMMQAFGEVKDGECPNMN NDFDEMVWLVGNISGVQSLLNDGASDGAVGVPRDIAAKVERNMKCLDNDQWWGVPRGTRAAVWNLLPMLAPPNADAWAEL EASAKAGFDSGIRLGSALYAMSAFSKGNDERLRQAIRDYAANDEGLNPDYAMLDAIAGFIIQGISDREWTENTGKRTPIG GTGTFWDDTASSGPAIDINDLL >Mature_341_residues GSLSMKKMLRHSGLALVGSAILALQGCGVVYKATGDVLVSFGRSEMLPYMMTYDDVRMACVTGEAQTPLLMSFERVGSDP SKLGAMVFTVAATCAEQIALDAELRYMRSVKDGRVSEAQDARIEQKRWSAIAANRQYKAYNYMMQAFGEVKDGECPNMNN DFDEMVWLVGNISGVQSLLNDGASDGAVGVPRDIAAKVERNMKCLDNDQWWGVPRGTRAAVWNLLPMLAPPNADAWAELE ASAKAGFDSGIRLGSALYAMSAFSKGNDERLRQAIRDYAANDEGLNPDYAMLDAIAGFIIQGISDREWTENTGKRTPIGG TGTFWDDTASSGPAIDINDLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37118; Mature: 36987
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSLSMKKMLRHSGLALVGSAILALQGCGVVYKATGDVLVSFGRSEMLPYMMTYDDVRMA CCCHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCHHHCCCHHEECCCCEEE CVTGEAQTPLLMSFERVGSDPSKLGAMVFTVAATCAEQIALDAELRYMRSVKDGRVSEAQ EECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DARIEQKRWSAIAANRQYKAYNYMMQAFGEVKDGECPNMNNDFDEMVWLVGNISGVQSLL HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHH NDGASDGAVGVPRDIAAKVERNMKCLDNDQWWGVPRGTRAAVWNLLPMLAPPNADAWAEL HCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH EASAKAGFDSGIRLGSALYAMSAFSKGNDERLRQAIRDYAANDEGLNPDYAMLDAIAGFI HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH IQGISDREWTENTGKRTPIGGTGTFWDDTASSGPAIDINDLL HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHCCC >Mature Secondary Structure GSLSMKKMLRHSGLALVGSAILALQGCGVVYKATGDVLVSFGRSEMLPYMMTYDDVRMA CCHHHHHHHHHCCHHHHHHHHHHHHCCCEEEECCCHHHHHCCHHHCCCHHEECCCCEEE CVTGEAQTPLLMSFERVGSDPSKLGAMVFTVAATCAEQIALDAELRYMRSVKDGRVSEAQ EECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DARIEQKRWSAIAANRQYKAYNYMMQAFGEVKDGECPNMNNDFDEMVWLVGNISGVQSLL HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCHHHHHHHH NDGASDGAVGVPRDIAAKVERNMKCLDNDQWWGVPRGTRAAVWNLLPMLAPPNADAWAEL HCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHH EASAKAGFDSGIRLGSALYAMSAFSKGNDERLRQAIRDYAANDEGLNPDYAMLDAIAGFI HHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH IQGISDREWTENTGKRTPIGGTGTFWDDTASSGPAIDINDLL HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA