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The map label for this gene is yddE [C]

Identifier: 110834585

GI number: 110834585

Start: 1962531

End: 1963304

Strand: Direct

Name: yddE [C]

Synonym: ABO_1724

Alternate gene names: 110834585

Gene position: 1962531-1963304 (Clockwise)

Preceding gene: 110834584

Following gene: 110834586

Centisome position: 62.9

GC content: 59.69

Gene sequence:

>774_bases
ATGAAACTGTACCAAGTGGACGCCTTTACCGATGCGTTGTTTGCCGGCAACCCCGCCGCCGTGGTGCCGCTGACACACTG
GCTAGATGACGCCCTACTGCAGAACATCGCACTGGAAAACAACCTCTCGGAAACCGCCTTTCTGGTGCCCGACGAACAGG
GCTACGCGCTGCGCTGGTTTACCCCAACAGTCGAAGTGGATCTGTGCGGCCACGCCACGCTCGCTGCTGCTTGGGTAGTC
TTCCATGCTCTGGGATTTCCCGGTGAACGGGTACGCTTTTCCACAGCCTCCGGCTCCTTGTTCGTCACCCGCAGTGGGCA
AACACTGAGCCTGGACTTTCCGTCCCGGCCGGCCCATGCGCTCACCGATCTCACCCCGTTCTCCCAAGCGCTGGATTTAC
CCCTTCGCGAGGTGCTACAGGCTCGTGACACGCTGGTTATCGTGGACAACGCCGACCAGGTGCGTCATTTTCAGCCCGAC
TTCACCGCCATCGCGGCACTGGATACCTTCGCAGTAATGATTTCCGCCCCCGGCGACGACTGTGATTTTGTCAGCCGTTT
TTTTGCCCCGGCCAAAGGCGTTCCGGAAGACCCGGTCACCGGTTCTGCCCATTGCACTCTGGTGCCGTACTGGGCGGAAA
AACTCGGCAAAACACATCTTCATGCCCGCCAGCTATCTGCCCGGGGCGGAGAATTGCACTGTCAGTTAAAAGGCGACCGC
GTCACACTTAGCGGCACCGCACGCTGCTACCTGCAAGGTGAACTGCAACTGTGA

Upstream 100 bases:

>100_bases
GGCGCCTGAGGCTGCAGCCGGGGCACGGTGTTTCAGCAAGCAATGCCCCGGCACGCCGCTAACCAAAATACACCCGGAAC
ATGCAAACACGAGTCACACT

Downstream 100 bases:

>100_bases
TGATGCCACTGTGATAAGTCCCTCCGCCCACTACGACCTGGTCTTTGTCGGTGCTGGCCATAGCCACGCGCTGGCCCTGC
GCATGCTGGCCATGAAGCCG

Product: phenazine biosynthesis-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKLYQVDAFTDALFAGNPAAVVPLTHWLDDALLQNIALENNLSETAFLVPDEQGYALRWFTPTVEVDLCGHATLAAAWVV
FHALGFPGERVRFSTASGSLFVTRSGQTLSLDFPSRPAHALTDLTPFSQALDLPLREVLQARDTLVIVDNADQVRHFQPD
FTAIAALDTFAVMISAPGDDCDFVSRFFAPAKGVPEDPVTGSAHCTLVPYWAEKLGKTHLHARQLSARGGELHCQLKGDR
VTLSGTARCYLQGELQL

Sequences:

>Translated_257_residues
MKLYQVDAFTDALFAGNPAAVVPLTHWLDDALLQNIALENNLSETAFLVPDEQGYALRWFTPTVEVDLCGHATLAAAWVV
FHALGFPGERVRFSTASGSLFVTRSGQTLSLDFPSRPAHALTDLTPFSQALDLPLREVLQARDTLVIVDNADQVRHFQPD
FTAIAALDTFAVMISAPGDDCDFVSRFFAPAKGVPEDPVTGSAHCTLVPYWAEKLGKTHLHARQLSARGGELHCQLKGDR
VTLSGTARCYLQGELQL
>Mature_257_residues
MKLYQVDAFTDALFAGNPAAVVPLTHWLDDALLQNIALENNLSETAFLVPDEQGYALRWFTPTVEVDLCGHATLAAAWVV
FHALGFPGERVRFSTASGSLFVTRSGQTLSLDFPSRPAHALTDLTPFSQALDLPLREVLQARDTLVIVDNADQVRHFQPD
FTAIAALDTFAVMISAPGDDCDFVSRFFAPAKGVPEDPVTGSAHCTLVPYWAEKLGKTHLHARQLSARGGELHCQLKGDR
VTLSGTARCYLQGELQL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=296, Percent_Identity=37.8378378378378, Blast_Score=160, Evalue=1e-39,
Organism=Homo sapiens, GI74316009, Length=263, Percent_Identity=36.5019011406844, Blast_Score=139, Evalue=2e-33,
Organism=Escherichia coli, GI1787737, Length=293, Percent_Identity=30.3754266211604, Blast_Score=88, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=33.4405144694534, Blast_Score=141, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=33.4405144694534, Blast_Score=141, Evalue=3e-34,
Organism=Caenorhabditis elegans, GI17542158, Length=308, Percent_Identity=32.1428571428571, Blast_Score=121, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17542152, Length=308, Percent_Identity=32.1428571428571, Blast_Score=121, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 28020; Mature: 28020

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYQVDAFTDALFAGNPAAVVPLTHWLDDALLQNIALENNLSETAFLVPDEQGYALRWF
CEEEEECHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
TPTVEVDLCGHATLAAAWVVFHALGFPGERVRFSTASGSLFVTRSGQTLSLDFPSRPAHA
CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCHH
LTDLTPFSQALDLPLREVLQARDTLVIVDNADQVRHFQPDFTAIAALDTFAVMISAPGDD
HHCCCHHHHHHCCCHHHHHHCCCCEEEEECCHHHEECCCCHHHHHHHHEEEEEEECCCCC
CDFVSRFFAPAKGVPEDPVTGSAHCTLVPYWAEKLGKTHLHARQLSARGGELHCQLKGDR
HHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHCCCCCEEEEEEECCE
VTLSGTARCYLQGELQL
EEEECCEEEEEEEEECC
>Mature Secondary Structure
MKLYQVDAFTDALFAGNPAAVVPLTHWLDDALLQNIALENNLSETAFLVPDEQGYALRWF
CEEEEECHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEE
TPTVEVDLCGHATLAAAWVVFHALGFPGERVRFSTASGSLFVTRSGQTLSLDFPSRPAHA
CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCEEEEECCCCCCHH
LTDLTPFSQALDLPLREVLQARDTLVIVDNADQVRHFQPDFTAIAALDTFAVMISAPGDD
HHCCCHHHHHHCCCHHHHHHCCCCEEEEECCHHHEECCCCHHHHHHHHEEEEEEECCCCC
CDFVSRFFAPAKGVPEDPVTGSAHCTLVPYWAEKLGKTHLHARQLSARGGELHCQLKGDR
HHHHHHHHCCCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHCCCCCEEEEEEECCE
VTLSGTARCYLQGELQL
EEEECCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]