| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is ybbP [H]
Identifier: 110834263
GI number: 110834263
Start: 1596067
End: 1598472
Strand: Direct
Name: ybbP [H]
Synonym: ABO_1402
Alternate gene names: 110834263
Gene position: 1596067-1598472 (Clockwise)
Preceding gene: 110834261
Following gene: 110834265
Centisome position: 51.15
GC content: 58.52
Gene sequence:
>2406_bases GTGTTTAAACCCTGGCGTTCTCCTGCTTTTCGAGTGCAAGCGATTGCCTTACTGGTAGCCGCTTTCGCCATGACCGCCAT GCTGATTCTACGCGACAGCGTGGACCAGCGTTTTAACCAGCGCACGGCGGTTGCATTAGGCGCTGACTGGATACTGGAAG GGACCCGCTTTCCAGAGCCCTCCCAACAACAGGCAGTAGCTGACCTTCGCCATGCTCAGGCAGTAAGTTTTTCCAGCGTA CTGATCAACAACGATCAATTCCTGCTCGCCAGCATTCGGGCTTTATCCGAGGATTTCCCGCTCTATGGCGAACTATCCGT CAGCGATAGTCGATTCAGCGAACCTTACCCAATAGGACATGGCCCAAAGTCCGGTACCGTCTGGCTGGCAGGTCAGGCGC TGGACCGGCTGGGTTTAAAAACCGGCGAGTTTATTACCCTTGGTGAACGCAGTTTTCTCATCACCAAAGTGCTAGTGCAG GAGCCGGACCAGCAGGCGGGCTTTTATAGCATGAACCCACGCGCGCTGATTCACCTGGCGGACCTTGAAAGCACCGCAGT GCTTGGCCCGGGCAGCCGCTATCGTCACCACCTATTGGTGGCAGCGGATGATGCCCAGCGAACCGTGCTAGATAAACAAC TCAGCGACACCCTACGTTCGGACCAATCCATTGAAACCGTGGGCACCACAGAACTGCGCAGCCAAGGCCCGGTTGAGCAG ATGTTCCTCTGGTCACAATTGGCGGTGATGTTAGTGGTGCTGTTGTGCGCTGCGGCCATTTATCTCACCGCCAGCCACCG CGCACGGCAACAACAGACACTGTGTGCCGTCATGAAAACAGTGGGCGCCCGACAACAGCAAATCGTCCGGCGATTACTGG GTGGCGATGTGCTGGCTCTGCTACTGCCGATTCTTGCCGGGGTCGGGTTGGCGGTGCTGGTAGGCTGGCAACTCGCAGCC TTACTAGGAGCAGATGGCCTGTTTGTCACCCCCGTAGTCTGGGGGCTGGTGGGGCCTGTGCTGCTCTGGCTTGGCTTCGC CGCCCCGACCCTGTGGGTCAGCCTGTCGTTGCCCGCTACGGCTTTGCTCAGCGGCCGCGAGGCGCCCGCCAGGCTGGGGC GACGTGTGCTGCTTATCGCTATCCTCACCCCGATTCCACTGGCCGCCATCATGACCGGCTCCCTGGCCGCACTCTGGCCA CTGCTGCTACTTACCCTTGCGGTATCACTCGGCTTGCCGATAATTCTGTGGCCGCTGGTAATGCTGATGGACCGCTTCAG TGCCCGGCTTGGTCTCGCTGGCCGGCTGGCTTTGCGCAGGCTCAGCCGTCGCAAAGCGGCTACCCTACCCTTGTTGGCCG CGCTGATTATTTCCCTCTCCGTGTTATCCCTGTCGGTTCAGACTGGGCGCGAGCTGCTCGGTGACTGGCGGGCAACATTG CCTGAGCAAGCCCCCAATTATTTCGTCATCAACTTGTTTGATCAGGATATTGACGATTTCAAGAACTGGCTTACGGACCA TAACAGTGAAGCCCAGCCACTCTATCCAGTCGTTCGGGCACGCCTTACCGAGATAAACGATCAGCCGGTGCGCGACGCCG TTACCAAAGAACAAGACCGTGCCGAGCGGGCCCTAAACCGGGATCTGTCGCTTACCCAAGCTGCACGTCTGCCCGAGAGC AACAAGCTTACCGACGGCCGCTGGGCAACCGGGCAAGACGAAGTTACGGTGGAAACCAAATTGGCTGAATCGCTGGGCCT TGAGTTGGGCGATTCACTCACCTTCACTGGCCCCGGGCCAGCCATTAACGCCACGGTGGTAGGCCTGCGAGAGGTGGATT GGGAAAGCTTTGCGCCCAATTTCTATTTCATCTTCTCGCCGGACACGTTGAAAGCCCAGAGCCGCACCTGGATTACCAGT TTTTTTCTGCCCCAAGTGCAGCAAGCGGAGCTGGGAGGGCTGGTGCAGAAATTTCCACAGATCAGCCTGCTGGACGTGAA TGCCATCCTCGCCACGCTCCAAGACATCATTGGCCAAGCTAGCCGCGCCGCTTTTGTGGTGGGTGTGTTGCTGTTACTGG CCGCATTGCTGGTGCTTATGGCCGCGCTGTTGGCGATGACCGATACCTTGCGGCGCGATAATCACTTGCTGGTGGTTATT GGCGGGCGCCGTGCCTTACTGCGTAAGACCGCCGCACTACAGGCGTTCTATCTGTTCGGTGGTGCGGCGCTATTAGCCAA TTTGATTCATCTGGCCGCATTGATTCCATTGGGCATGCGCCTGTTCGACAGCCAGCTACCGCTAAGCCCCTGGCTGCTAC TGCCCTGGAGTATCGCCGCTCTAGTCACACTGGCCGCTTTGCTAGCACCACCGCTGATGCCCAAAGCATCAGCGACGAGC CACTAA
Upstream 100 bases:
>100_bases CTGAATGCAGAACAGAAAACCGCGTTAGTGCTGGTCACCCACGACCCTCAACTGGCGGCACGCTGTGAGCGCTCGGTTTG CCTGGCGGAGGGCCGGCTCA
Downstream 100 bases:
>100_bases CGAAAAGGCAGCCCAAGCGGCCACGCTACTGGTGGCCATCAAAGCGGTCATGGGCAGCGTACTGCCGTCGTGGAGTATGC CGAGCACGATGCCAATAAGG
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MFKPWRSPAFRVQAIALLVAAFAMTAMLILRDSVDQRFNQRTAVALGADWILEGTRFPEPSQQQAVADLRHAQAVSFSSV LINNDQFLLASIRALSEDFPLYGELSVSDSRFSEPYPIGHGPKSGTVWLAGQALDRLGLKTGEFITLGERSFLITKVLVQ EPDQQAGFYSMNPRALIHLADLESTAVLGPGSRYRHHLLVAADDAQRTVLDKQLSDTLRSDQSIETVGTTELRSQGPVEQ MFLWSQLAVMLVVLLCAAAIYLTASHRARQQQTLCAVMKTVGARQQQIVRRLLGGDVLALLLPILAGVGLAVLVGWQLAA LLGADGLFVTPVVWGLVGPVLLWLGFAAPTLWVSLSLPATALLSGREAPARLGRRVLLIAILTPIPLAAIMTGSLAALWP LLLLTLAVSLGLPIILWPLVMLMDRFSARLGLAGRLALRRLSRRKAATLPLLAALIISLSVLSLSVQTGRELLGDWRATL PEQAPNYFVINLFDQDIDDFKNWLTDHNSEAQPLYPVVRARLTEINDQPVRDAVTKEQDRAERALNRDLSLTQAARLPES NKLTDGRWATGQDEVTVETKLAESLGLELGDSLTFTGPGPAINATVVGLREVDWESFAPNFYFIFSPDTLKAQSRTWITS FFLPQVQQAELGGLVQKFPQISLLDVNAILATLQDIIGQASRAAFVVGVLLLLAALLVLMAALLAMTDTLRRDNHLLVVI GGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLPWSIAALVTLAALLAPPLMPKASATS H
Sequences:
>Translated_801_residues MFKPWRSPAFRVQAIALLVAAFAMTAMLILRDSVDQRFNQRTAVALGADWILEGTRFPEPSQQQAVADLRHAQAVSFSSV LINNDQFLLASIRALSEDFPLYGELSVSDSRFSEPYPIGHGPKSGTVWLAGQALDRLGLKTGEFITLGERSFLITKVLVQ EPDQQAGFYSMNPRALIHLADLESTAVLGPGSRYRHHLLVAADDAQRTVLDKQLSDTLRSDQSIETVGTTELRSQGPVEQ MFLWSQLAVMLVVLLCAAAIYLTASHRARQQQTLCAVMKTVGARQQQIVRRLLGGDVLALLLPILAGVGLAVLVGWQLAA LLGADGLFVTPVVWGLVGPVLLWLGFAAPTLWVSLSLPATALLSGREAPARLGRRVLLIAILTPIPLAAIMTGSLAALWP LLLLTLAVSLGLPIILWPLVMLMDRFSARLGLAGRLALRRLSRRKAATLPLLAALIISLSVLSLSVQTGRELLGDWRATL PEQAPNYFVINLFDQDIDDFKNWLTDHNSEAQPLYPVVRARLTEINDQPVRDAVTKEQDRAERALNRDLSLTQAARLPES NKLTDGRWATGQDEVTVETKLAESLGLELGDSLTFTGPGPAINATVVGLREVDWESFAPNFYFIFSPDTLKAQSRTWITS FFLPQVQQAELGGLVQKFPQISLLDVNAILATLQDIIGQASRAAFVVGVLLLLAALLVLMAALLAMTDTLRRDNHLLVVI GGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLPWSIAALVTLAALLAPPLMPKASATS H >Mature_801_residues MFKPWRSPAFRVQAIALLVAAFAMTAMLILRDSVDQRFNQRTAVALGADWILEGTRFPEPSQQQAVADLRHAQAVSFSSV LINNDQFLLASIRALSEDFPLYGELSVSDSRFSEPYPIGHGPKSGTVWLAGQALDRLGLKTGEFITLGERSFLITKVLVQ EPDQQAGFYSMNPRALIHLADLESTAVLGPGSRYRHHLLVAADDAQRTVLDKQLSDTLRSDQSIETVGTTELRSQGPVEQ MFLWSQLAVMLVVLLCAAAIYLTASHRARQQQTLCAVMKTVGARQQQIVRRLLGGDVLALLLPILAGVGLAVLVGWQLAA LLGADGLFVTPVVWGLVGPVLLWLGFAAPTLWVSLSLPATALLSGREAPARLGRRVLLIAILTPIPLAAIMTGSLAALWP LLLLTLAVSLGLPIILWPLVMLMDRFSARLGLAGRLALRRLSRRKAATLPLLAALIISLSVLSLSVQTGRELLGDWRATL PEQAPNYFVINLFDQDIDDFKNWLTDHNSEAQPLYPVVRARLTEINDQPVRDAVTKEQDRAERALNRDLSLTQAARLPES NKLTDGRWATGQDEVTVETKLAESLGLELGDSLTFTGPGPAINATVVGLREVDWESFAPNFYFIFSPDTLKAQSRTWITS FFLPQVQQAELGGLVQKFPQISLLDVNAILATLQDIIGQASRAAFVVGVLLLLAALLVLMAALLAMTDTLRRDNHLLVVI GGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLPWSIAALVTLAALLAPPLMPKASATS H
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=814, Percent_Identity=30.7125307125307, Blast_Score=289, Evalue=4e-79,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 87155; Mature: 87155
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKPWRSPAFRVQAIALLVAAFAMTAMLILRDSVDQRFNQRTAVALGADWILEGTRFPEP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCC SQQQAVADLRHAQAVSFSSVLINNDQFLLASIRALSEDFPLYGELSVSDSRFSEPYPIGH CHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC GPKSGTVWLAGQALDRLGLKTGEFITLGERSFLITKVLVQEPDQQAGFYSMNPRALIHLA CCCCCEEEEEHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCEECCCCEEEEEE DLESTAVLGPGSRYRHHLLVAADDAQRTVLDKQLSDTLRSDQSIETVGTTELRSQGPVEQ CCCCCEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCHHH MFLWSQLAVMLVVLLCAAAIYLTASHRARQQQTLCAVMKTVGARQQQIVRRLLGGDVLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH LLPILAGVGLAVLVGWQLAALLGADGLFVTPVVWGLVGPVLLWLGFAAPTLWVSLSLPAT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH ALLSGREAPARLGRRVLLIAILTPIPLAAIMTGSLAALWPLLLLTLAVSLGLPIILWPLV HHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHH MLMDRFSARLGLAGRLALRRLSRRKAATLPLLAALIISLSVLSLSVQTGRELLGDWRATL HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEQAPNYFVINLFDQDIDDFKNWLTDHNSEAQPLYPVVRARLTEINDQPVRDAVTKEQDR CCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH AERALNRDLSLTQAARLPESNKLTDGRWATGQDEVTVETKLAESLGLELGDSLTFTGPGP HHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCEEECCCCC AINATVVGLREVDWESFAPNFYFIFSPDTLKAQSRTWITSFFLPQVQQAELGGLVQKFPQ CCCEEEEEHEECCHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC ISLLDVNAILATLQDIIGQASRAAFVVGVLLLLAALLVLMAALLAMTDTLRRDNHLLVVI CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLPWSIAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LVTLAALLAPPLMPKASATSH HHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MFKPWRSPAFRVQAIALLVAAFAMTAMLILRDSVDQRFNQRTAVALGADWILEGTRFPEP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCCCC SQQQAVADLRHAQAVSFSSVLINNDQFLLASIRALSEDFPLYGELSVSDSRFSEPYPIGH CHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCC GPKSGTVWLAGQALDRLGLKTGEFITLGERSFLITKVLVQEPDQQAGFYSMNPRALIHLA CCCCCEEEEEHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCCCCCEECCCCEEEEEE DLESTAVLGPGSRYRHHLLVAADDAQRTVLDKQLSDTLRSDQSIETVGTTELRSQGPVEQ CCCCCEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCHHCCCHHHHCCCCHHH MFLWSQLAVMLVVLLCAAAIYLTASHRARQQQTLCAVMKTVGARQQQIVRRLLGGDVLAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHH LLPILAGVGLAVLVGWQLAALLGADGLFVTPVVWGLVGPVLLWLGFAAPTLWVSLSLPAT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCHH ALLSGREAPARLGRRVLLIAILTPIPLAAIMTGSLAALWPLLLLTLAVSLGLPIILWPLV HHHCCCCCHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHH MLMDRFSARLGLAGRLALRRLSRRKAATLPLLAALIISLSVLSLSVQTGRELLGDWRATL HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PEQAPNYFVINLFDQDIDDFKNWLTDHNSEAQPLYPVVRARLTEINDQPVRDAVTKEQDR CCCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH AERALNRDLSLTQAARLPESNKLTDGRWATGQDEVTVETKLAESLGLELGDSLTFTGPGP HHHHHCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCEEECCCCC AINATVVGLREVDWESFAPNFYFIFSPDTLKAQSRTWITSFFLPQVQQAELGGLVQKFPQ CCCEEEEEHEECCHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC ISLLDVNAILATLQDIIGQASRAAFVVGVLLLLAALLVLMAALLAMTDTLRRDNHLLVVI CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GGRRALLRKTAALQAFYLFGGAALLANLIHLAALIPLGMRLFDSQLPLSPWLLLPWSIAA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LVTLAALLAPPLMPKASATSH HHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]