| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834259
Identifier: 110834259
GI number: 110834259
Start: 1591019
End: 1593697
Strand: Direct
Name: 110834259
Synonym: ABO_1398
Alternate gene names: NA
Gene position: 1591019-1593697 (Clockwise)
Preceding gene: 110834258
Following gene: 110834261
Centisome position: 50.99
GC content: 56.36
Gene sequence:
>2679_bases ATGGATTGGCGAACTCTGGGCCGAAAAAGACGCATTATTGGAAAGCAAAACGCCGCACGCTTGAGAAATCTAGCGTCGGG CATCTGGCGCATTTTGAGACTTTATATGTTTGGCCGATTCCTAAAACCCCGCTGGCAACACGCCAAGCCCGAGATTCGAC TCAAAGCCATTGAGCAGCTTGACCACAGCAACGATGCCGACCTGCTTCATCAACTGGCACGAGGCGATGCCAGTGCGTTA GTACGCGCTGCAGCCACCGCTAAGCTCACTGATTTTGCCGCGCTAGACGAAGTCCATCAGCGTGATGAAACACCATCCGT TCGTGAAGCGGCCTCCATGCGCATTATGTCGTTGCTAGCAGGCACCACGGATGACTCACCCAACAGCGACACTCGCCTTC GCCTGATTCGCCTTACCGATAATCAGGACGTGCTTGCCCATGTTGCGGCTCATAGCCCGGACATGCACAGCCGCATGGCG GCCCTTGAACGGCTCAGCGACGAAGCCGTACTCTACCAGTTGGCCCTGGATGCCCCCACGCAAGCCCTGCGTGTTGCTTG CGTGCAGAACATCAGCTCTCTCTCCCTGCTCAAACGCCTAGCTAAACACGGTCGCGACAAGCGGGTTACTCGTTTGGCTC GAGATCAAGCCCGTGAGCTCCAACAACAACAGCAACAAACTGAGAGGGAAACCGTTAAGGTCTACCACCTTGCAGACCGC CTGGAGCAGCATGCCCGACGGCGCGTGGATGCCCTTTACGGACCCCAGCTGGAGCAGCTAGAACAGCAATGGCGACAGCT TTCACCCCAAGCCTCAGCGGATATTGCCTCACGGATCCAACAAGCGCTGCATCAATGTCGTAACCAGCTGACCGAATCGC AAGAGCAGACACGCCAACAGGCTCTTGCTGAAACCGCTAAAGCAGAGCGTGAAGCTGCCGCCCATACTCTATTTCAATTA TTGAGCCAAGCTACGCCGGAAACCTGGGATCATCACTTAGGCGAAATGCGCTCAGCATTGGCGACTCAGCGTCGCCGCTG GAATAGTGCGGACGAACACGCTCAGGCGCTCGATCAAGACCGCATGGCGTTCAACGATTTGGTGACCGCGTTCGAGCAAC TGCTCACACTGGCCACCGACATCAATGCCGCAGACTCACAAGAAACATTGACAGAATTAGCAACACGCTGGCCGAAAGAG TACCAGCCGCCATCCGCATTACTCGCACTGCGCACCCGTAAAAAAGACGATACTGCTGAAACAGCCGAGCCCGAGCGGGC CAAGCCTGCACAGCCACACAGAGGTCTATTAGTAGCTCTCAAACGAGAGCTTCGCCAGGGTAACCTGCGCCATGCGAACC GCCTTTGGCATAGGGCTCAGACGATTATCGACACCCACAATGACGATGCTCTTAGTGCCGAATTAAGCAAATTAGCCGCG CGCCGGGCGGAATTGCAAGACTGGCACCGCTTTGCCGCCGAACCGAAAAAAGTGGCGCTGTGTGAGCAAATGGAAGCCCT TGATGGCACCACCATGGATGCCCCCGAGCTTGCCACTGCCACTCAGGCTCTCCACGACGAGTGGCGCTCGCTGATGAGTT CGGACCAAGATGAGGACCAGTCTCTCTGGGCCCGATTCAAAGAAGCATCCGATAAGGCCTACCAGCCTTGTCGTGCACAT TTTGCTGAGCTGGATGCTATCAAGGCCAGCAATCTGGAAAAGCGTCAGACACTTTGCCAACAACTGGATAACTTTATTAC CGTGCAGAACTGGGAAAAAGCGGATTGGCACGGCGTCTGGCAAATTCGTCAGCAGGCTCCCAAAGACTGGAAGGCCCTGC ACCCCATTCGCTTTACCGATGCACGGGATATTCAGAAACGCTTTTCCGCTCTGCTGGCCCAGCTCGACGAACAGTTAAAT GGCTATATTGAGAAAGCGGAGAACGAACGTAAACAGTTGCTTGATCAGGCTCGTGCTCTAATGGAGCTTGATGATCCCCA ACAGGCAACCCGCGAAGCACAAGCCATCCAGAAACGCTGGCGACAATCAGCCTGGCTACCTCCCGCACAGCACAGGGCTT TGCAAAAGCAGTTTCGTAAAACCATGGACGCGCTTTTCGATGCTCGCAATCGGGATATGGCCGCCCACCGAAAACGGCAG GAACAAGCGGGACAAACACTGGCCACACATATCAGCGCGCTTGAAGACTGCCTGGCTCAACCTTTCACGGACGACAGCGC AGACAATTTGAGCCGCGCATCGGCCGCAGTGGATGAACATCTTGGTGGCGAGCTCCCGCAACCCTTGGTTCGCAAAGCTC AACAGCTCAAACGCCGCGCCAGTGAACGCCTCCAGCAACTCAGCCGCTGGCAACAGTGGCAGCAATTGCGCAATGCCGTC GCGGGCTTGCCGGAAACTGCCGGAAACGAGGAAAGTGACGATGCCCTCACCTTAGCGGTGGCCTTTGAAGCCTTGGCCGG CGTGCCTAGCCCAGAACTAGAGCGCCAGCGTCGCTTGCAATGGCAACTAGAGCAGCTACCCGGAGCGATGAAACGACAGC AGTTTGACGCCCGAGAAGAGATGCAGCGATTGCTAGCAGACCACGCGTTGCCGGTGTCTACTGCGATCAAGGCACGGCTA CATCATGCCATCGCAGTGCTGGAGCCGGGCAATGCGTAA
Upstream 100 bases:
>100_bases TGGACGAGGTTGAAATCGTTGTGCAGCAACGCGTTATTCCCGCCTGGGCCTCAGAGGGCAACTATGAAGACGACGCGGCA TTCCGCGCACGTTTTCAACA
Downstream 100 bases:
>100_bases TCGGTTACCTCGACCTAACCGCCCTTTTAAGGACTGAAAAGACAGCAATGGTTCCGCCCCTAACTCGCAGGCGTTCCCAT GGGTTGTTTCGCGAATGATG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 892; Mature: 892
Protein sequence:
>892_residues MDWRTLGRKRRIIGKQNAARLRNLASGIWRILRLYMFGRFLKPRWQHAKPEIRLKAIEQLDHSNDADLLHQLARGDASAL VRAAATAKLTDFAALDEVHQRDETPSVREAASMRIMSLLAGTTDDSPNSDTRLRLIRLTDNQDVLAHVAAHSPDMHSRMA ALERLSDEAVLYQLALDAPTQALRVACVQNISSLSLLKRLAKHGRDKRVTRLARDQARELQQQQQQTERETVKVYHLADR LEQHARRRVDALYGPQLEQLEQQWRQLSPQASADIASRIQQALHQCRNQLTESQEQTRQQALAETAKAEREAAAHTLFQL LSQATPETWDHHLGEMRSALATQRRRWNSADEHAQALDQDRMAFNDLVTAFEQLLTLATDINAADSQETLTELATRWPKE YQPPSALLALRTRKKDDTAETAEPERAKPAQPHRGLLVALKRELRQGNLRHANRLWHRAQTIIDTHNDDALSAELSKLAA RRAELQDWHRFAAEPKKVALCEQMEALDGTTMDAPELATATQALHDEWRSLMSSDQDEDQSLWARFKEASDKAYQPCRAH FAELDAIKASNLEKRQTLCQQLDNFITVQNWEKADWHGVWQIRQQAPKDWKALHPIRFTDARDIQKRFSALLAQLDEQLN GYIEKAENERKQLLDQARALMELDDPQQATREAQAIQKRWRQSAWLPPAQHRALQKQFRKTMDALFDARNRDMAAHRKRQ EQAGQTLATHISALEDCLAQPFTDDSADNLSRASAAVDEHLGGELPQPLVRKAQQLKRRASERLQQLSRWQQWQQLRNAV AGLPETAGNEESDDALTLAVAFEALAGVPSPELERQRRLQWQLEQLPGAMKRQQFDAREEMQRLLADHALPVSTAIKARL HHAIAVLEPGNA
Sequences:
>Translated_892_residues MDWRTLGRKRRIIGKQNAARLRNLASGIWRILRLYMFGRFLKPRWQHAKPEIRLKAIEQLDHSNDADLLHQLARGDASAL VRAAATAKLTDFAALDEVHQRDETPSVREAASMRIMSLLAGTTDDSPNSDTRLRLIRLTDNQDVLAHVAAHSPDMHSRMA ALERLSDEAVLYQLALDAPTQALRVACVQNISSLSLLKRLAKHGRDKRVTRLARDQARELQQQQQQTERETVKVYHLADR LEQHARRRVDALYGPQLEQLEQQWRQLSPQASADIASRIQQALHQCRNQLTESQEQTRQQALAETAKAEREAAAHTLFQL LSQATPETWDHHLGEMRSALATQRRRWNSADEHAQALDQDRMAFNDLVTAFEQLLTLATDINAADSQETLTELATRWPKE YQPPSALLALRTRKKDDTAETAEPERAKPAQPHRGLLVALKRELRQGNLRHANRLWHRAQTIIDTHNDDALSAELSKLAA RRAELQDWHRFAAEPKKVALCEQMEALDGTTMDAPELATATQALHDEWRSLMSSDQDEDQSLWARFKEASDKAYQPCRAH FAELDAIKASNLEKRQTLCQQLDNFITVQNWEKADWHGVWQIRQQAPKDWKALHPIRFTDARDIQKRFSALLAQLDEQLN GYIEKAENERKQLLDQARALMELDDPQQATREAQAIQKRWRQSAWLPPAQHRALQKQFRKTMDALFDARNRDMAAHRKRQ EQAGQTLATHISALEDCLAQPFTDDSADNLSRASAAVDEHLGGELPQPLVRKAQQLKRRASERLQQLSRWQQWQQLRNAV AGLPETAGNEESDDALTLAVAFEALAGVPSPELERQRRLQWQLEQLPGAMKRQQFDAREEMQRLLADHALPVSTAIKARL HHAIAVLEPGNA >Mature_892_residues MDWRTLGRKRRIIGKQNAARLRNLASGIWRILRLYMFGRFLKPRWQHAKPEIRLKAIEQLDHSNDADLLHQLARGDASAL VRAAATAKLTDFAALDEVHQRDETPSVREAASMRIMSLLAGTTDDSPNSDTRLRLIRLTDNQDVLAHVAAHSPDMHSRMA ALERLSDEAVLYQLALDAPTQALRVACVQNISSLSLLKRLAKHGRDKRVTRLARDQARELQQQQQQTERETVKVYHLADR LEQHARRRVDALYGPQLEQLEQQWRQLSPQASADIASRIQQALHQCRNQLTESQEQTRQQALAETAKAEREAAAHTLFQL LSQATPETWDHHLGEMRSALATQRRRWNSADEHAQALDQDRMAFNDLVTAFEQLLTLATDINAADSQETLTELATRWPKE YQPPSALLALRTRKKDDTAETAEPERAKPAQPHRGLLVALKRELRQGNLRHANRLWHRAQTIIDTHNDDALSAELSKLAA RRAELQDWHRFAAEPKKVALCEQMEALDGTTMDAPELATATQALHDEWRSLMSSDQDEDQSLWARFKEASDKAYQPCRAH FAELDAIKASNLEKRQTLCQQLDNFITVQNWEKADWHGVWQIRQQAPKDWKALHPIRFTDARDIQKRFSALLAQLDEQLN GYIEKAENERKQLLDQARALMELDDPQQATREAQAIQKRWRQSAWLPPAQHRALQKQFRKTMDALFDARNRDMAAHRKRQ EQAGQTLATHISALEDCLAQPFTDDSADNLSRASAAVDEHLGGELPQPLVRKAQQLKRRASERLQQLSRWQQWQQLRNAV AGLPETAGNEESDDALTLAVAFEALAGVPSPELERQRRLQWQLEQLPGAMKRQQFDAREEMQRLLADHALPVSTAIKARL HHAIAVLEPGNA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101877; Mature: 101877
Theoretical pI: Translated: 8.04; Mature: 8.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWRTLGRKRRIIGKQNAARLRNLASGIWRILRLYMFGRFLKPRWQHAKPEIRLKAIEQL CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHH DHSNDADLLHQLARGDASALVRAAATAKLTDFAALDEVHQRDETPSVREAASMRIMSLLA CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH GTTDDSPNSDTRLRLIRLTDNQDVLAHVAAHSPDMHSRMAALERLSDEAVLYQLALDAPT CCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHCCHH QALRVACVQNISSLSLLKRLAKHGRDKRVTRLARDQARELQQQQQQTERETVKVYHLADR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEQHARRRVDALYGPQLEQLEQQWRQLSPQASADIASRIQQALHQCRNQLTESQEQTRQQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAETAKAEREAAAHTLFQLLSQATPETWDHHLGEMRSALATQRRRWNSADEHAQALDQD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RMAFNDLVTAFEQLLTLATDINAADSQETLTELATRWPKEYQPPSALLALRTRKKDDTAE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC TAEPERAKPAQPHRGLLVALKRELRQGNLRHANRLWHRAQTIIDTHNDDALSAELSKLAA CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RRAELQDWHRFAAEPKKVALCEQMEALDGTTMDAPELATATQALHDEWRSLMSSDQDEDQ HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH SLWARFKEASDKAYQPCRAHFAELDAIKASNLEKRQTLCQQLDNFITVQNWEKADWHGVW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEECCCCCCCCHHHHH QIRQQAPKDWKALHPIRFTDARDIQKRFSALLAQLDEQLNGYIEKAENERKQLLDQARAL HHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELDDPQQATREAQAIQKRWRQSAWLPPAQHRALQKQFRKTMDALFDARNRDMAAHRKRQ HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH EQAGQTLATHISALEDCLAQPFTDDSADNLSRASAAVDEHLGGELPQPLVRKAQQLKRRA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SERLQQLSRWQQWQQLRNAVAGLPETAGNEESDDALTLAVAFEALAGVPSPELERQRRLQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH WQLEQLPGAMKRQQFDAREEMQRLLADHALPVSTAIKARLHHAIAVLEPGNA HHHHHCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCC >Mature Secondary Structure MDWRTLGRKRRIIGKQNAARLRNLASGIWRILRLYMFGRFLKPRWQHAKPEIRLKAIEQL CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHH DHSNDADLLHQLARGDASALVRAAATAKLTDFAALDEVHQRDETPSVREAASMRIMSLLA CCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH GTTDDSPNSDTRLRLIRLTDNQDVLAHVAAHSPDMHSRMAALERLSDEAVLYQLALDAPT CCCCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHCCHH QALRVACVQNISSLSLLKRLAKHGRDKRVTRLARDQARELQQQQQQTERETVKVYHLADR HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LEQHARRRVDALYGPQLEQLEQQWRQLSPQASADIASRIQQALHQCRNQLTESQEQTRQQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALAETAKAEREAAAHTLFQLLSQATPETWDHHLGEMRSALATQRRRWNSADEHAQALDQD HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH RMAFNDLVTAFEQLLTLATDINAADSQETLTELATRWPKEYQPPSALLALRTRKKDDTAE HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC TAEPERAKPAQPHRGLLVALKRELRQGNLRHANRLWHRAQTIIDTHNDDALSAELSKLAA CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RRAELQDWHRFAAEPKKVALCEQMEALDGTTMDAPELATATQALHDEWRSLMSSDQDEDQ HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH SLWARFKEASDKAYQPCRAHFAELDAIKASNLEKRQTLCQQLDNFITVQNWEKADWHGVW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEECCCCCCCCHHHHH QIRQQAPKDWKALHPIRFTDARDIQKRFSALLAQLDEQLNGYIEKAENERKQLLDQARAL HHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELDDPQQATREAQAIQKRWRQSAWLPPAQHRALQKQFRKTMDALFDARNRDMAAHRKRQ HHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH EQAGQTLATHISALEDCLAQPFTDDSADNLSRASAAVDEHLGGELPQPLVRKAQQLKRRA HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH SERLQQLSRWQQWQQLRNAVAGLPETAGNEESDDALTLAVAFEALAGVPSPELERQRRLQ HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH WQLEQLPGAMKRQQFDAREEMQRLLADHALPVSTAIKARLHHAIAVLEPGNA HHHHHCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA