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The map label for this gene is rarA [H]

Identifier: 110834153

GI number: 110834153

Start: 1467315

End: 1468646

Strand: Direct

Name: rarA [H]

Synonym: ABO_1292

Alternate gene names: 110834153

Gene position: 1467315-1468646 (Clockwise)

Preceding gene: 110834152

Following gene: 110834154

Centisome position: 47.03

GC content: 57.73

Gene sequence:

>1332_bases
ATGAGCGATCTTTTTGCCCTTGATGCTGCCCAACAGGCTCAGCCCCTGGCGGCTCGCCTGCGGCCGACTCGCTTGGACGA
CTATGTAGGTCAGCAGCACCTGGTGGGTGAAGGCAAGCCATTGCGCCAGGCGCTGGACCGGGGCCAGCTACATTCGATGA
TTTTGTGGGGCCCGCCGGGGACGGGTAAAACCACCCTGGCATTAATCATGGCGCAAACCGTGGATGCTGCCTTCATCACC
TTGTCTGCGGTGTTGTCCGGGGTAAAAGATATTCGTGCGGCGGTGGAGCAAGCTCAGATTCTACTGGGCCAGGGGCGGCG
CACGGTCTTGTTTGTGGATGAAGTTCATCGTTTCAACAAGGCCCAGCAGGATGCGTTTTTACCCCATGTGGAAGAGGGCA
CCATCACCTTCATCGGCGCTACTACCGAAAACCCTTCGTTCGAGCTTAATAACGCATTGTTATCGCGAGCACGGGTTTAC
CGGCTCCGCGCGCTGGCGCCGGAAGATCTGAGTGGGTTGCTTGTCCGTGCGCTGCATGATCCAGCACTTAATGGCATGCA
GCTAGATGCACAAGCGACCGAGCTGTTGCTCAACTATGCCGATGGCGATGCCCGGCGGTTGCTGAACATGCTTGAAGTGG
CTGCAGATCTGGCTGATGTGGACGTGCCAAATATCGGCGCGGACCTGATGCGTGAAGTGCTTCGTGATGCCGTTCGCCGG
TTCGACAAAGGCGGCGACCTATTTTATGACCAAATCAGCGCCATGCATAAATCCGTCCGCGGTTCCGACCCGGATGCGGC
CCTATACTGGTTCGCTCGTATGCTCGATGGCGGCTGCGACCCGCTCTACATTGCTCGCCGCGTGGTACGTATGGCCAGTG
AAGACATTGGCAATGCGGACCCGCGGGCATTGACGCTGTGCCTGCAAGCCTGGGATGTGCAGGAGCGGTTAGGCAGCCCG
GAAGGCGAGTTGACCATCGCCCAGGCTATTGCCTATCTGGCTGTCGCGCCGAAAAGCAATGCGGTGTATAACGCCTATAA
TCAGGCTCGGGCGCTGGTCCGGCAGCAACCCACCGATGAGGTGCCTTTGCACCTACGCAATGCACCCACTCAGCTTATGA
AAGACGAAGGCTTTGGCGCCGAGTATCATTACGCCCATGATTTTCCGGACGCTTTTGTGCCTGGGGAAAATTACTTCCCG
GCCAGCCTTCAAGACACACGGCTGTATGAACCGGTGAATCGTGGGCTTGAGATCAAAGTGGCAGAAAAGCTGGCCCGCCT
ACGAGAATTAAACGCCAGCAGTGACTGGACCCGCTACGGGAAGCGCAAATAA

Upstream 100 bases:

>100_bases
CGATCCGCCGGAAGGCACGGATGTCATTCAGCAACAACAGTAATGGCGGGTAACGGCCGGGGCACCCGGTCGTTGTCTAG
TCACCAGTAGGCGTTTTTCC

Downstream 100 bases:

>100_bases
TGTCGTTATCAGCGATTACCGAAGGCGGCATGCTGCCGTGGATAGCGGTAGCCATCGGTGGCGCCGTTGGCGCCTGCCTG
CGTTTCGCCACCAGCTTATG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSDLFALDAAQQAQPLAARLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPGTGKTTLALIMAQTVDAAFIT
LSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNALLSRARVY
RLRALAPEDLSGLLVRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNIGADLMREVLRDAVRR
FDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPRALTLCLQAWDVQERLGSP
EGELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFP
ASLQDTRLYEPVNRGLEIKVAEKLARLRELNASSDWTRYGKRK

Sequences:

>Translated_443_residues
MSDLFALDAAQQAQPLAARLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPGTGKTTLALIMAQTVDAAFIT
LSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNALLSRARVY
RLRALAPEDLSGLLVRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNIGADLMREVLRDAVRR
FDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPRALTLCLQAWDVQERLGSP
EGELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFP
ASLQDTRLYEPVNRGLEIKVAEKLARLRELNASSDWTRYGKRK
>Mature_442_residues
SDLFALDAAQQAQPLAARLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPGTGKTTLALIMAQTVDAAFITL
SAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNKAQQDAFLPHVEEGTITFIGATTENPSFELNNALLSRARVYR
LRALAPEDLSGLLVRALHDPALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNIGADLMREVLRDAVRRF
DKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNADPRALTLCLQAWDVQERLGSPE
GELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDEVPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFPA
SLQDTRLYEPVNRGLEIKVAEKLARLRELNASSDWTRYGKRK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=44.2176870748299, Blast_Score=334, Evalue=1e-91,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=39.4557823129252, Blast_Score=275, Evalue=8e-74,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=57.0469798657718, Blast_Score=493, Evalue=1e-141,
Organism=Caenorhabditis elegans, GI17541988, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=40.8450704225352, Blast_Score=310, Evalue=3e-85,
Organism=Saccharomyces cerevisiae, GI6324039, Length=236, Percent_Identity=25.8474576271186, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 49041; Mature: 48910

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFALDAAQQAQPLAARLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPG
CCCCHHCCCHHHCCHHHHHCCCCHHHHHCCCHHCCCCCCHHHHHHCCCCCCEEEEECCCC
TGKTTLALIMAQTVDAAFITLSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
AQQDAFLPHVEEGTITFIGATTENPSFELNNALLSRARVYRLRALAPEDLSGLLVRALHD
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNIGADLMREVLRDAVRR
CCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
FDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNAD
HCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRALTLCLQAWDVQERLGSPEGELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
VPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFPASLQDTRLYEPVNRGLEIKV
CCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHH
AEKLARLRELNASSDWTRYGKRK
HHHHHHHHHCCCCCCHHHCCCCC
>Mature Secondary Structure 
SDLFALDAAQQAQPLAARLRPTRLDDYVGQQHLVGEGKPLRQALDRGQLHSMILWGPPG
CCCHHCCCHHHCCHHHHHCCCCHHHHHCCCHHCCCCCCHHHHHHCCCCCCEEEEECCCC
TGKTTLALIMAQTVDAAFITLSAVLSGVKDIRAAVEQAQILLGQGRRTVLFVDEVHRFNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
AQQDAFLPHVEEGTITFIGATTENPSFELNNALLSRARVYRLRALAPEDLSGLLVRALHD
HHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
PALNGMQLDAQATELLLNYADGDARRLLNMLEVAADLADVDVPNIGADLMREVLRDAVRR
CCCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
FDKGGDLFYDQISAMHKSVRGSDPDAALYWFARMLDGGCDPLYIARRVVRMASEDIGNAD
HCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
PRALTLCLQAWDVQERLGSPEGELTIAQAIAYLAVAPKSNAVYNAYNQARALVRQQPTDE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC
VPLHLRNAPTQLMKDEGFGAEYHYAHDFPDAFVPGENYFPASLQDTRLYEPVNRGLEIKV
CCEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHH
AEKLARLRELNASSDWTRYGKRK
HHHHHHHHHCCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]