| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834121
Identifier: 110834121
GI number: 110834121
Start: 1435043
End: 1435627
Strand: Direct
Name: 110834121
Synonym: ABO_1260
Alternate gene names: NA
Gene position: 1435043-1435627 (Clockwise)
Preceding gene: 110834120
Following gene: 110834124
Centisome position: 45.99
GC content: 57.95
Gene sequence:
>585_bases ATGAGTGATGCCCGTTTCCATATCGTGTTTTCCGGGAAGTTGGTCGGCGGCGCCGATTTATCCACGGTGAAGAGTAACCT GGCACGGTTGTTCAAAATGGATAATGCTCGGGTGGAGAGGTTGTTTTCGGCTCAGCCGGTGGTGATCAAGAAAAACACCG ATCAGGCTACCGCCATGAAGTTTCGGGCGCTTATGAAGCAAGCGGGCGCTGAATGCGAAATCAGGCCGGTGGCTGTGCAG TCAGCTCCCGAATTGGCAGCAGCACCGGTGCCTTCGTCGGGAATGCCGGTCACATCGGTTGAGTCCTACCGGTCAGCCGG TGAGGCCCGTATCCCAAGTGCGGGCTCAGGCGGCTTGGAGACAGTAGGAACCATTCGTACCGGAGGTACCGGTTTTTCAG GTGCCTTTTCGGTAGCAGATGTGGGGGAAAACTTGAATAACGCGGAACATGCGCCGCCTCCACCGGCACCGGATGTCAGT CATTTGAGTATGGCGCCGCCAGGGGAAAGGCTGGGGCAGCCAACTGGCGTGGCGCCTCCGGCGCAACCCGACATCCGACA TCTGTCACTCAAAGACAACGAGTGA
Upstream 100 bases:
>100_bases GCGGGCACTGGGCTTAAACCCGTCCCGGACCATCGCAGCACTGGCGGAATATTGTGCGGCTCAGATGGACTAAATTCCCA GAGAGGAGTAACGCAGAAGC
Downstream 100 bases:
>100_bases CACGCAATGCCAGGATTCGCCTCGCATTGCGAGGGCGCTAACGTTGCCTGCAAGTTGATGTTGCTCGGGTTCGGGTTCAT CTCATTGAGTGGGTCGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 194; Mature: 193
Protein sequence:
>194_residues MSDARFHIVFSGKLVGGADLSTVKSNLARLFKMDNARVERLFSAQPVVIKKNTDQATAMKFRALMKQAGAECEIRPVAVQ SAPELAAAPVPSSGMPVTSVESYRSAGEARIPSAGSGGLETVGTIRTGGTGFSGAFSVADVGENLNNAEHAPPPPAPDVS HLSMAPPGERLGQPTGVAPPAQPDIRHLSLKDNE
Sequences:
>Translated_194_residues MSDARFHIVFSGKLVGGADLSTVKSNLARLFKMDNARVERLFSAQPVVIKKNTDQATAMKFRALMKQAGAECEIRPVAVQ SAPELAAAPVPSSGMPVTSVESYRSAGEARIPSAGSGGLETVGTIRTGGTGFSGAFSVADVGENLNNAEHAPPPPAPDVS HLSMAPPGERLGQPTGVAPPAQPDIRHLSLKDNE >Mature_193_residues SDARFHIVFSGKLVGGADLSTVKSNLARLFKMDNARVERLFSAQPVVIKKNTDQATAMKFRALMKQAGAECEIRPVAVQS APELAAAPVPSSGMPVTSVESYRSAGEARIPSAGSGGLETVGTIRTGGTGFSGAFSVADVGENLNNAEHAPPPPAPDVSH LSMAPPGERLGQPTGVAPPAQPDIRHLSLKDNE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20139; Mature: 20008
Theoretical pI: Translated: 7.68; Mature: 7.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDARFHIVFSGKLVGGADLSTVKSNLARLFKMDNARVERLFSAQPVVIKKNTDQATAMK CCCCEEEEEEECEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHH FRALMKQAGAECEIRPVAVQSAPELAAAPVPSSGMPVTSVESYRSAGEARIPSAGSGGLE HHHHHHHCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC TVGTIRTGGTGFSGAFSVADVGENLNNAEHAPPPPAPDVSHLSMAPPGERLGQPTGVAPP EEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC AQPDIRHLSLKDNE CCCCCEEEECCCCC >Mature Secondary Structure SDARFHIVFSGKLVGGADLSTVKSNLARLFKMDNARVERLFSAQPVVIKKNTDQATAMK CCCEEEEEEECEEECCCCHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHHHH FRALMKQAGAECEIRPVAVQSAPELAAAPVPSSGMPVTSVESYRSAGEARIPSAGSGGLE HHHHHHHCCCCCEEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC TVGTIRTGGTGFSGAFSVADVGENLNNAEHAPPPPAPDVSHLSMAPPGERLGQPTGVAPP EEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC AQPDIRHLSLKDNE CCCCCEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA