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The map label for this gene is truD [H]

Identifier: 110834029

GI number: 110834029

Start: 1329015

End: 1330070

Strand: Direct

Name: truD [H]

Synonym: ABO_1168

Alternate gene names: 110834029

Gene position: 1329015-1330070 (Clockwise)

Preceding gene: 110834028

Following gene: 110834030

Centisome position: 42.59

GC content: 59.85

Gene sequence:

>1056_bases
GTGAATTACCCTATGGAAACAACCGAAACCGGTTTGCCCAGAGCCCACGGTGGGCCGGTTTGCCAGGGCATATTGAAAGC
TCGGCCAGAGGACTTTCAGGTTGCGGAGCATATGCACGTGACCCCGGAAGGCCAGGGCGAACATCTTTGGCTGGAAATCG
AAAAAACCGGCTGGAATACCGAAGACGTGGCCATGTTGCTGGCTAAACAGGCACGGGTCCATCGCCTTTCGGTGGGCTAT
AGCGGGCTAAAAGACAAACATGCTGTGACCCGGCAATGGTTTAGCCTGCACCTGCCGGGCAAAGACGACCCGGACTTTCA
TTGGCCCGATGGGCTTACCGTTCTGCAATCCGGCCGTCATCGCCGCAAGCTCAATCGTGGCACTCACCGTGCCAACGATT
TCTGCCTTCGCGTCACCCGCTTCGTGGGTGATCGGGATGCATTGGAGCAGCAGCTACAGATGATTATCGCGCAAGGGGTG
CCGAACTACTTCGGTGAGCAACGTTTTGGCCGAGGATCAGGGAACCTGGTGCGCGGCACAGAATGGTTGCTGGGCGGTGA
GGCGCCGCGTAAGAAGGCCTTGCGGGGTATGTGGCTGTCCGCGGTGCGCAGCAATCTGTTTAATCTGATCCTCGCCGAAA
GGGTGCGCCAGGGTTGTTGGAATACCGTGCTGGGCGGCGACATTTTGCAGCCGCAAGGCAGCCGGGGCTTGTTCCTGGCC
GATGACGACCCGGCCGCGATGGAGCGTGTGGCCAATGGCGAGGTGCACCCTACGGCCCCTTTGCCGGGCGTGCCGGGCAT
GGCATCATCTGGCCCCTGTAATCAGCTTGAACAGCAAATACTGGCGCCTCATGCTCCTGTCATAGAGGGGCTGCGGCAGA
TCAAGGTAGAAGAAGCCCGCCGCGCCACCCGGTTGCCGGTACGGGACTTGCAGTGGGTCTGGCATACGGATCCAGAACGG
GAAGGGGAAGACTGCTTGGAGCTGGCGTTTACGCTGCCCACAGGCGCTTTTGCCACGACAGTAATGGCAGAGCTTGTCAG
TTCACCGGCTGACTGA

Upstream 100 bases:

>100_bases
AAGGACAGGTTTCTGTGAAAGCGACCACCACGGAAAAACTGGGCTTCACCGGCCGCAAGGAAGGTATCGCGGTGCAGGCC
GTAGTACTGCTGGAGAGTCA

Downstream 100 bases:

>100_bases
CTCGCATTGAGGCAAACGAACACAGATGGATATCCAACTCAGCGGCATCGGTATGACCTCTGCACGGACCCGGGATAGGT
TAGTGCAGCGGCTGCGTGAT

Product: hypothetical protein

Products: NA

Alternate protein names: tRNA pseudouridylate synthase D; tRNA-uridine isomerase D [H]

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNYPMETTETGLPRAHGGPVCQGILKARPEDFQVAEHMHVTPEGQGEHLWLEIEKTGWNTEDVAMLLAKQARVHRLSVGY
SGLKDKHAVTRQWFSLHLPGKDDPDFHWPDGLTVLQSGRHRRKLNRGTHRANDFCLRVTRFVGDRDALEQQLQMIIAQGV
PNYFGEQRFGRGSGNLVRGTEWLLGGEAPRKKALRGMWLSAVRSNLFNLILAERVRQGCWNTVLGGDILQPQGSRGLFLA
DDDPAAMERVANGEVHPTAPLPGVPGMASSGPCNQLEQQILAPHAPVIEGLRQIKVEEARRATRLPVRDLQWVWHTDPER
EGEDCLELAFTLPTGAFATTVMAELVSSPAD

Sequences:

>Translated_351_residues
MNYPMETTETGLPRAHGGPVCQGILKARPEDFQVAEHMHVTPEGQGEHLWLEIEKTGWNTEDVAMLLAKQARVHRLSVGY
SGLKDKHAVTRQWFSLHLPGKDDPDFHWPDGLTVLQSGRHRRKLNRGTHRANDFCLRVTRFVGDRDALEQQLQMIIAQGV
PNYFGEQRFGRGSGNLVRGTEWLLGGEAPRKKALRGMWLSAVRSNLFNLILAERVRQGCWNTVLGGDILQPQGSRGLFLA
DDDPAAMERVANGEVHPTAPLPGVPGMASSGPCNQLEQQILAPHAPVIEGLRQIKVEEARRATRLPVRDLQWVWHTDPER
EGEDCLELAFTLPTGAFATTVMAELVSSPAD
>Mature_351_residues
MNYPMETTETGLPRAHGGPVCQGILKARPEDFQVAEHMHVTPEGQGEHLWLEIEKTGWNTEDVAMLLAKQARVHRLSVGY
SGLKDKHAVTRQWFSLHLPGKDDPDFHWPDGLTVLQSGRHRRKLNRGTHRANDFCLRVTRFVGDRDALEQQLQMIIAQGV
PNYFGEQRFGRGSGNLVRGTEWLLGGEAPRKKALRGMWLSAVRSNLFNLILAERVRQGCWNTVLGGDILQPQGSRGLFLA
DDDPAAMERVANGEVHPTAPLPGVPGMASSGPCNQLEQQILAPHAPVIEGLRQIKVEEARRATRLPVRDLQWVWHTDPER
EGEDCLELAFTLPTGAFATTVMAELVSSPAD

Specific function: Responsible for synthesis of pseudouridine from uracil- 13 in transfer RNAs [H]

COG id: COG0585

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRUD domain [H]

Homologues:

Organism=Escherichia coli, GI1789102, Length=344, Percent_Identity=41.5697674418605, Blast_Score=232, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR001656
- InterPro:   IPR020119
- InterPro:   IPR011760 [H]

Pfam domain/function: PF01142 TruD [H]

EC number: NA

Molecular weight: Translated: 39038; Mature: 39038

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50984 TRUD ; PS01268 UPF0024

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYPMETTETGLPRAHGGPVCQGILKARPEDFQVAEHMHVTPEGQGEHLWLEIEKTGWNT
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHEECCCCCCCCEEEEEEECCCCCH
EDVAMLLAKQARVHRLSVGYSGLKDKHAVTRQWFSLHLPGKDDPDFHWPDGLTVLQSGRH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHCCHH
RRKLNRGTHRANDFCLRVTRFVGDRDALEQQLQMIIAQGVPNYFGEQRFGRGSGNLVRGT
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEECC
EWLLGGEAPRKKALRGMWLSAVRSNLFNLILAERVRQGCWNTVLGGDILQPQGSRGLFLA
HHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
DDDPAAMERVANGEVHPTAPLPGVPGMASSGPCNQLEQQILAPHAPVIEGLRQIKVEEAR
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RATRLPVRDLQWVWHTDPEREGEDCLELAFTLPTGAFATTVMAELVSSPAD
HHHCCCHHHCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNYPMETTETGLPRAHGGPVCQGILKARPEDFQVAEHMHVTPEGQGEHLWLEIEKTGWNT
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHEECCCCCCCCEEEEEEECCCCCH
EDVAMLLAKQARVHRLSVGYSGLKDKHAVTRQWFSLHLPGKDDPDFHWPDGLTVLQSGRH
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCCCCCHHHHHCCHH
RRKLNRGTHRANDFCLRVTRFVGDRDALEQQLQMIIAQGVPNYFGEQRFGRGSGNLVRGT
HHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCEEECC
EWLLGGEAPRKKALRGMWLSAVRSNLFNLILAERVRQGCWNTVLGGDILQPQGSRGLFLA
HHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
DDDPAAMERVANGEVHPTAPLPGVPGMASSGPCNQLEQQILAPHAPVIEGLRQIKVEEAR
CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RATRLPVRDLQWVWHTDPEREGEDCLELAFTLPTGAFATTVMAELVSSPAD
HHHCCCHHHCCEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA