| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833968
Identifier: 110833968
GI number: 110833968
Start: 1259281
End: 1260216
Strand: Direct
Name: 110833968
Synonym: ABO_1107
Alternate gene names: NA
Gene position: 1259281-1260216 (Clockwise)
Preceding gene: 110833967
Following gene: 110833969
Centisome position: 40.36
GC content: 50.0
Gene sequence:
>936_bases ATGCTGAGTCGTACGGCATCCGACCTATACTGGCTATCACGTGACGTCGAACGGGCAGAAAATACCGCCCGGGTGCTGGA CGTGGTGTGGAATCTGTCACTGATTCGTTACGCGGTCGATACCCAGCAGGAAATTACGGCGCCATTGTCCATTACCGGTA CCTGGGATGACTATAGCGCCCGTTATGGCAAGGTAACCACGAATAATGTGCTGTACTTTTTTACCCTTGACCCTGACAGC CCAGCCAGCATTTATTCCTGTCTTCGCCAGGCCCGAGCCAGTGCTCATGCGGTGCGAGGAAAAATCACTTCAGAAATGTG GGAAAGCGTTAACGGTACTTGGCTAGAGCTCAAGGAAATCAGTCAAACCGGGCTGCAGAATTATGGCGAAACCGCTTTCT TTGAGTGGGTGAAAAATCGATCACACCTGTTCCGTGGGGCTACCTATGGCACCCTGATGAGAAGCGATACTTTTCGTTTT TTACGCTTGGGGACCTTTATTGAAAGGGCGGATAACACCGCTCGTATTCTCGATGTTAAACACCGGGAAGAAGAATCGGA GAGTGACTCCACGGTGGATTATTACCGTTGGCATGCCTTGCTACGTTCATTGGGAGGGTACGAAGCTTTTCGCGAAATGT TTAGTGAAACTATTAATGCCGAGCGCGTTGCCGAGTTGTTGATTCTCAGGCCGGAAGTTCCCCGGTCGTTGTTATCGTGT CTGCAAATGTTGTGTGAGCTTCTGCCTGCCATTGAAGGAGAGGCGGGACTTGAGGCTAAACGCTTAGCTGCTGTGCAACT TGCTCGTCTTCAATATGGCGACATGGGGCATATTCTTGAGATTGGACTGCATAACTACCTGACTGATTTCTTGCGCCGGA TTAATGAACTGGCTGACACCATTCAGAGTGAATACCTGGAGCTGGTATGGAATTAA
Upstream 100 bases:
>100_bases TGACACGGGTTGCGCTTAAGCCCGGTTCCTTGGTTGTTAATTCCTCACAGGGTGGTGGTACCAAGGATACTTGGGTTTTG GAGAGCGGGGAGGACAGCAC
Downstream 100 bases:
>100_bases CAATACGACATAGCACGGAATATCGTTATTCGGAACGGGTTAAGCACAGTACCCAGTACCTGCGGCTGACCCCCAGACCT TCGCTACGACAAAAAGTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MLSRTASDLYWLSRDVERAENTARVLDVVWNLSLIRYAVDTQQEITAPLSITGTWDDYSARYGKVTTNNVLYFFTLDPDS PASIYSCLRQARASAHAVRGKITSEMWESVNGTWLELKEISQTGLQNYGETAFFEWVKNRSHLFRGATYGTLMRSDTFRF LRLGTFIERADNTARILDVKHREEESESDSTVDYYRWHALLRSLGGYEAFREMFSETINAERVAELLILRPEVPRSLLSC LQMLCELLPAIEGEAGLEAKRLAAVQLARLQYGDMGHILEIGLHNYLTDFLRRINELADTIQSEYLELVWN
Sequences:
>Translated_311_residues MLSRTASDLYWLSRDVERAENTARVLDVVWNLSLIRYAVDTQQEITAPLSITGTWDDYSARYGKVTTNNVLYFFTLDPDS PASIYSCLRQARASAHAVRGKITSEMWESVNGTWLELKEISQTGLQNYGETAFFEWVKNRSHLFRGATYGTLMRSDTFRF LRLGTFIERADNTARILDVKHREEESESDSTVDYYRWHALLRSLGGYEAFREMFSETINAERVAELLILRPEVPRSLLSC LQMLCELLPAIEGEAGLEAKRLAAVQLARLQYGDMGHILEIGLHNYLTDFLRRINELADTIQSEYLELVWN >Mature_311_residues MLSRTASDLYWLSRDVERAENTARVLDVVWNLSLIRYAVDTQQEITAPLSITGTWDDYSARYGKVTTNNVLYFFTLDPDS PASIYSCLRQARASAHAVRGKITSEMWESVNGTWLELKEISQTGLQNYGETAFFEWVKNRSHLFRGATYGTLMRSDTFRF LRLGTFIERADNTARILDVKHREEESESDSTVDYYRWHALLRSLGGYEAFREMFSETINAERVAELLILRPEVPRSLLSC LQMLCELLPAIEGEAGLEAKRLAAVQLARLQYGDMGHILEIGLHNYLTDFLRRINELADTIQSEYLELVWN
Specific function: Unknown
COG id: COG2307
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35790; Mature: 35790
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSRTASDLYWLSRDVERAENTARVLDVVWNLSLIRYAVDTQQEITAPLSITGTWDDYSA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCC RYGKVTTNNVLYFFTLDPDSPASIYSCLRQARASAHAVRGKITSEMWESVNGTWLELKEI CCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHH SQTGLQNYGETAFFEWVKNRSHLFRGATYGTLMRSDTFRFLRLGTFIERADNTARILDVK HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH HREEESESDSTVDYYRWHALLRSLGGYEAFREMFSETINAERVAELLILRPEVPRSLLSC HHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHH LQMLCELLPAIEGEAGLEAKRLAAVQLARLQYGDMGHILEIGLHNYLTDFLRRINELADT HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IQSEYLELVWN HHHHHHHHHCC >Mature Secondary Structure MLSRTASDLYWLSRDVERAENTARVLDVVWNLSLIRYAVDTQQEITAPLSITGTWDDYSA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEECCCCCCC RYGKVTTNNVLYFFTLDPDSPASIYSCLRQARASAHAVRGKITSEMWESVNGTWLELKEI CCCCEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHH SQTGLQNYGETAFFEWVKNRSHLFRGATYGTLMRSDTFRFLRLGTFIERADNTARILDVK HHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECH HREEESESDSTVDYYRWHALLRSLGGYEAFREMFSETINAERVAELLILRPEVPRSLLSC HHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHH LQMLCELLPAIEGEAGLEAKRLAAVQLARLQYGDMGHILEIGLHNYLTDFLRRINELADT HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IQSEYLELVWN HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA