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The map label for this gene is yceD [H]

Identifier: 110833926

GI number: 110833926

Start: 1208646

End: 1209161

Strand: Direct

Name: yceD [H]

Synonym: ABO_1065

Alternate gene names: 110833926

Gene position: 1208646-1209161 (Clockwise)

Preceding gene: 110833924

Following gene: 110833927

Centisome position: 38.74

GC content: 53.68

Gene sequence:

>516_bases
ATGTTTTCAGGGCAACTGCCACAGTTCCTCGATCCTCGCAAATATGCGGATCAAGGTCGCATCGTTGAAGGCCAGCTTAC
CGTTGGAGACCTGCCACGCCTGCAGGAATACCGCGATAGCTTGGACCAGCCAGTAGCAATATCGCTGGCGTTCGATCGTG
ATGATGAGGGGCATCGGCGTATCGAGGGCGAGGTTAGCACCGTATTGGTGCTGCCATGTCAGCGCTGCCTGGAGCCAGTG
AGTTATTCTATTACTGCCCATATCGATGTGGCGTTGGTTTGGAATGAGGATCAGGCCAAGGCATTGCCGGGGCGACTGGA
TCCTTGGTTGGTTGGCGAAGAACGCATGGTTCTTACCGATCTAATCGAAGAGGAGCTGTTGCTGGCTATGCCACTGGTGG
CTCTGCATGACTCTTGCCCGACAGCTTTACCGCAGGACAGCGGTAAACCTGAGAAACACGAAAACGCGGATAATCCTTTT
GCCGTGCTGGCCAAATTAAAAGGTCAAGGCAAGTAA

Upstream 100 bases:

>100_bases
TTATTTTTTCATGACGCACGAAAAACCCTGTTGACTCAGGTGTTTAGTGCCTCACATTAACTTTGACAGCGGGGCCTCGC
GGCCCTAGAATTGCGCGCTT

Downstream 100 bases:

>100_bases
ATTCAGGCTGAATAAACGCCCGAGGAGCTCGAAATGGCTGTTCAAAAGAACCGTAAAACCCGTTCAAAGCGTGGCATGCG
CCGCTCTCACGATGCGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MFSGQLPQFLDPRKYADQGRIVEGQLTVGDLPRLQEYRDSLDQPVAISLAFDRDDEGHRRIEGEVSTVLVLPCQRCLEPV
SYSITAHIDVALVWNEDQAKALPGRLDPWLVGEERMVLTDLIEEELLLAMPLVALHDSCPTALPQDSGKPEKHENADNPF
AVLAKLKGQGK

Sequences:

>Translated_171_residues
MFSGQLPQFLDPRKYADQGRIVEGQLTVGDLPRLQEYRDSLDQPVAISLAFDRDDEGHRRIEGEVSTVLVLPCQRCLEPV
SYSITAHIDVALVWNEDQAKALPGRLDPWLVGEERMVLTDLIEEELLLAMPLVALHDSCPTALPQDSGKPEKHENADNPF
AVLAKLKGQGK
>Mature_171_residues
MFSGQLPQFLDPRKYADQGRIVEGQLTVGDLPRLQEYRDSLDQPVAISLAFDRDDEGHRRIEGEVSTVLVLPCQRCLEPV
SYSITAHIDVALVWNEDQAKALPGRLDPWLVGEERMVLTDLIEEELLLAMPLVALHDSCPTALPQDSGKPEKHENADNPF
AVLAKLKGQGK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=178, Percent_Identity=32.0224719101124, Blast_Score=81, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 19037; Mature: 19037

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSGQLPQFLDPRKYADQGRIVEGQLTVGDLPRLQEYRDSLDQPVAISLAFDRDDEGHRR
CCCCCCCCCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEE
IEGEVSTVLVLPCQRCLEPVSYSITAHIDVALVWNEDQAKALPGRLDPWLVGEERMVLTD
ECCCCEEEEEECHHHHCCHHCEEEEEEEEEEEEECCCHHHCCCCCCCCEEECCCCHHHHH
LIEEELLLAMPLVALHDSCPTALPQDSGKPEKHENADNPFAVLAKLKGQGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCC
>Mature Secondary Structure
MFSGQLPQFLDPRKYADQGRIVEGQLTVGDLPRLQEYRDSLDQPVAISLAFDRDDEGHRR
CCCCCCCCCCCCHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEE
IEGEVSTVLVLPCQRCLEPVSYSITAHIDVALVWNEDQAKALPGRLDPWLVGEERMVLTD
ECCCCEEEEEECHHHHCCHHCEEEEEEEEEEEEECCCHHHCCCCCCCCEEECCCCHHHHH
LIEEELLLAMPLVALHDSCPTALPQDSGKPEKHENADNPFAVLAKLKGQGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]