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The map label for this gene is kstR2 [H]

Identifier: 110833853

GI number: 110833853

Start: 1122320

End: 1122916

Strand: Direct

Name: kstR2 [H]

Synonym: ABO_0992

Alternate gene names: 110833853

Gene position: 1122320-1122916 (Clockwise)

Preceding gene: 110833845

Following gene: 110833854

Centisome position: 35.97

GC content: 54.1

Gene sequence:

>597_bases
ATGGCTGGTTTAATGGCAATTCATGGAATTGATGATTCTCCTCGTGGGCGGTTGCTCAGCGCGGCGGCGCATCTGTTTCG
GGATAAGGGGTTCGACCGTACCACTGTCCGCGATATTGCGGCATCAGTTGGGATCCAGAGCGGCTCTATTTTTCATCACT
TTAAAACCAAAGAGGATATCCTCTATGCCGTGATGGAAGAGGTAATCCACTTCAATACTGAGCGTTTGCGTCAGGCGGTG
GTCGCCCACAGCACGGGGCAGGAGCAATTGCGAGCGCTGATCCGAGCGGAGTTACAGTCCATTGTGGGCGATACTGCCGA
GGCAATGACGGTGATGGTCACCGAGTGGCGCTGCCTGAGTGAGGATAAGCAAGCCAGGGCACTAAAGTTGCGCGGTATCT
ACGAGCAACTGTGGCTGGATGTGCTAACACGCCTACATAAAGAGGGGGTTTTTACCACTGATCCCTTCATTATGCGGCGT
TTGCTGACAGGGATGACCGGTTGGGCGCCAAATTGGTTTGACCGCGAGGGGCCGCTGAGTCTGGATGATTTGGCCGATAT
TATACTTGCCCGTGTGATTGGTGAGGCGGAGAGATGA

Upstream 100 bases:

>100_bases
TCAGGGCTGCGTTTTTTAATGTTTCACGTTCTCCTGCTCCTGCCTTGCTGCCCCCCGCGCGTAAGCGGGATAATGTGTGC
GTTAATGATAGGGGTAAGCA

Downstream 100 bases:

>100_bases
TTGGTAACGCGATAGCCTGGGGGAAAACAGGTTACTCCATTATTGAGGAGGGGGAGTTGAACCGACAGACTTGGGCGCTG
GATGTGCATCACTACTTACT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MAGLMAIHGIDDSPRGRLLSAAAHLFRDKGFDRTTVRDIAASVGIQSGSIFHHFKTKEDILYAVMEEVIHFNTERLRQAV
VAHSTGQEQLRALIRAELQSIVGDTAEAMTVMVTEWRCLSEDKQARALKLRGIYEQLWLDVLTRLHKEGVFTTDPFIMRR
LLTGMTGWAPNWFDREGPLSLDDLADIILARVIGEAER

Sequences:

>Translated_198_residues
MAGLMAIHGIDDSPRGRLLSAAAHLFRDKGFDRTTVRDIAASVGIQSGSIFHHFKTKEDILYAVMEEVIHFNTERLRQAV
VAHSTGQEQLRALIRAELQSIVGDTAEAMTVMVTEWRCLSEDKQARALKLRGIYEQLWLDVLTRLHKEGVFTTDPFIMRR
LLTGMTGWAPNWFDREGPLSLDDLADIILARVIGEAER
>Mature_197_residues
AGLMAIHGIDDSPRGRLLSAAAHLFRDKGFDRTTVRDIAASVGIQSGSIFHHFKTKEDILYAVMEEVIHFNTERLRQAVV
AHSTGQEQLRALIRAELQSIVGDTAEAMTVMVTEWRCLSEDKQARALKLRGIYEQLWLDVLTRLHKEGVFTTDPFIMRRL
LTGMTGWAPNWFDREGPLSLDDLADIILARVIGEAER

Specific function: Controls the expression of a small regulon that may play a role in the utilization of cholesterol [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22343; Mature: 22212

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGLMAIHGIDDSPRGRLLSAAAHLFRDKGFDRTTVRDIAASVGIQSGSIFHHFKTKEDI
CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHH
LYAVMEEVIHFNTERLRQAVVAHSTGQEQLRALIRAELQSIVGDTAEAMTVMVTEWRCLS
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
EDKQARALKLRGIYEQLWLDVLTRLHKEGVFTTDPFIMRRLLTGMTGWAPNWFDREGPLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
LDDLADIILARVIGEAER
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AGLMAIHGIDDSPRGRLLSAAAHLFRDKGFDRTTVRDIAASVGIQSGSIFHHFKTKEDI
CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHH
LYAVMEEVIHFNTERLRQAVVAHSTGQEQLRALIRAELQSIVGDTAEAMTVMVTEWRCLS
HHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
EDKQARALKLRGIYEQLWLDVLTRLHKEGVFTTDPFIMRRLLTGMTGWAPNWFDREGPLS
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
LDDLADIILARVIGEAER
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA