| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833784
Identifier: 110833784
GI number: 110833784
Start: 1032237
End: 1033418
Strand: Direct
Name: 110833784
Synonym: ABO_0923
Alternate gene names: NA
Gene position: 1032237-1033418 (Clockwise)
Preceding gene: 110833783
Following gene: 110833785
Centisome position: 33.08
GC content: 53.05
Gene sequence:
>1182_bases TTGACGGATCTTGATTCGACGCCGCTTCAGCTTGTTCTGGCGCTTTTCATCTTTATCGCAGGCTTGGTATTTGCCGTCTC GGTAAGAGGGTACTTCCGTGCCCCATTCTCCAGATCTGTTTCCCTTTATCTTTGGCACAGTTTTTTCTGTGTTATTTATC TTGCCTACGTACTTAACTACGGGGGGGACGCCTCCGGCTATTTCAGGATGAGTTTGCACCCTGATATCGATTTTGCTTTT GGTACCTACGGTGTCCGCTTCGTGGTTTCTTTCCTGTCGCAAGGTATGGGCCTCTCGTTTCTTGGTTGCTCGCTAGTATT CCAGTTGTTCGGTTTTATTGGCCTTTTGGCATTTGATGGTGCCCTTCGTGAAGTCACTTGGGATAAGTCACGCAATATTC GTCTATTGGCGACCCTGATTGTTTTCCTTCCGTCGGTCAGTTTCTGGTCTTCCGGGCTGGGTAAGGATGCGCTGTCGTTC TGTGCCATGGGACTGTCGCTCTGGGCTGCATTGAGTTTGAAGCGCCGTTGGTGGCTGTTAGTTCTGGCTGTATTGCTCAT GTTGCTGGTGCGTCCTCATATGGCTGGGATGTTAGGGCTGGGACTGGCTGGTTCTTTTGTGTTTCAGCGGGGCATTCCGC TACCGCAACGGGTGGTGCTGGGCGGGATTGCGCTGGCCGCTGCCGTCTTCCTGGTTCCGCTTGGGCTGAATTACGCGGGA GTCGGGGAAGATGCGGGCGCTGACGATGTCATGCAGTACATTGAAGGCCGCCAGGGACATAACCTGAAAGGCGGTGGTGC GGTTGATATTTCCAGTATGAGCCCGCCGGTGCAGATGTTTACCTACCTGTTCCGCCCCACCCTGATTGAGGCTCGCAATC TTTTCTCGTTGGCGGCAGCGCTGGATAACACCATCTTGCTGTTCCTGTTCATTGCTGGGGGCTGGGCAATCCTTAAAAAA CCATTGCCTCCCCATTTGTTGGCTCACAACAGGATGTTCCTCTGGATCTACTCATTATGTGCCTGGCTGATTCTTGCCAT GACAACGGCGAACTTGGGTATCGCTCTGCGACAGAAATGGATGTTTGCTCCCATGCTGATCTTTTTGCTGATTTCGGTGG TTGGCCGTTCACGGTACCCAGCCGAGTCAGACACCCCGGCTGTTGATGGTGGCGCTCGATGA
Upstream 100 bases:
>100_bases GGTTAGGGCAGGCCGGCCGCGCCGCAGTCTGTAAGGGTTTCTCAATTGAAAGTCAGCTTGAAGCGATCAGTTCGAGCCTC GTGTTTACAGGAGGTGAGCG
Downstream 100 bases:
>100_bases CAAACCCGGTTTTTTTGTTGGTGGCCAGTTTTCCGGATTCGTTGATCAAGTTTCGTGGTCCGTTGATTGAAGGGCTGATT CAGGCGGGCTGCACCGTGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTDLDSTPLQLVLALFIFIAGLVFAVSVRGYFRAPFSRSVSLYLWHSFFCVIYLAYVLNYGGDASGYFRMSLHPDIDFAF GTYGVRFVVSFLSQGMGLSFLGCSLVFQLFGFIGLLAFDGALREVTWDKSRNIRLLATLIVFLPSVSFWSSGLGKDALSF CAMGLSLWAALSLKRRWWLLVLAVLLMLLVRPHMAGMLGLGLAGSFVFQRGIPLPQRVVLGGIALAAAVFLVPLGLNYAG VGEDAGADDVMQYIEGRQGHNLKGGGAVDISSMSPPVQMFTYLFRPTLIEARNLFSLAAALDNTILLFLFIAGGWAILKK PLPPHLLAHNRMFLWIYSLCAWLILAMTTANLGIALRQKWMFAPMLIFLLISVVGRSRYPAESDTPAVDGGAR
Sequences:
>Translated_393_residues MTDLDSTPLQLVLALFIFIAGLVFAVSVRGYFRAPFSRSVSLYLWHSFFCVIYLAYVLNYGGDASGYFRMSLHPDIDFAF GTYGVRFVVSFLSQGMGLSFLGCSLVFQLFGFIGLLAFDGALREVTWDKSRNIRLLATLIVFLPSVSFWSSGLGKDALSF CAMGLSLWAALSLKRRWWLLVLAVLLMLLVRPHMAGMLGLGLAGSFVFQRGIPLPQRVVLGGIALAAAVFLVPLGLNYAG VGEDAGADDVMQYIEGRQGHNLKGGGAVDISSMSPPVQMFTYLFRPTLIEARNLFSLAAALDNTILLFLFIAGGWAILKK PLPPHLLAHNRMFLWIYSLCAWLILAMTTANLGIALRQKWMFAPMLIFLLISVVGRSRYPAESDTPAVDGGAR >Mature_392_residues TDLDSTPLQLVLALFIFIAGLVFAVSVRGYFRAPFSRSVSLYLWHSFFCVIYLAYVLNYGGDASGYFRMSLHPDIDFAFG TYGVRFVVSFLSQGMGLSFLGCSLVFQLFGFIGLLAFDGALREVTWDKSRNIRLLATLIVFLPSVSFWSSGLGKDALSFC AMGLSLWAALSLKRRWWLLVLAVLLMLLVRPHMAGMLGLGLAGSFVFQRGIPLPQRVVLGGIALAAAVFLVPLGLNYAGV GEDAGADDVMQYIEGRQGHNLKGGGAVDISSMSPPVQMFTYLFRPTLIEARNLFSLAAALDNTILLFLFIAGGWAILKKP LPPHLLAHNRMFLWIYSLCAWLILAMTTANLGIALRQKWMFAPMLIFLLISVVGRSRYPAESDTPAVDGGAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43108; Mature: 42977
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDLDSTPLQLVLALFIFIAGLVFAVSVRGYFRAPFSRSVSLYLWHSFFCVIYLAYVLNY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC GGDASGYFRMSLHPDIDFAFGTYGVRFVVSFLSQGMGLSFLGCSLVFQLFGFIGLLAFDG CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ALREVTWDKSRNIRLLATLIVFLPSVSFWSSGLGKDALSFCAMGLSLWAALSLKRRWWLL HHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VLAVLLMLLVRPHMAGMLGLGLAGSFVFQRGIPLPQRVVLGGIALAAAVFLVPLGLNYAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC VGEDAGADDVMQYIEGRQGHNLKGGGAVDISSMSPPVQMFTYLFRPTLIEARNLFSLAAA CCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LDNTILLFLFIAGGWAILKKPLPPHLLAHNRMFLWIYSLCAWLILAMTTANLGIALRQKW HHHHHHHHHHHHCCHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFAPMLIFLLISVVGRSRYPAESDTPAVDGGAR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TDLDSTPLQLVLALFIFIAGLVFAVSVRGYFRAPFSRSVSLYLWHSFFCVIYLAYVLNY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC GGDASGYFRMSLHPDIDFAFGTYGVRFVVSFLSQGMGLSFLGCSLVFQLFGFIGLLAFDG CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH ALREVTWDKSRNIRLLATLIVFLPSVSFWSSGLGKDALSFCAMGLSLWAALSLKRRWWLL HHHHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VLAVLLMLLVRPHMAGMLGLGLAGSFVFQRGIPLPQRVVLGGIALAAAVFLVPLGLNYAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC VGEDAGADDVMQYIEGRQGHNLKGGGAVDISSMSPPVQMFTYLFRPTLIEARNLFSLAAA CCCCCCHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LDNTILLFLFIAGGWAILKKPLPPHLLAHNRMFLWIYSLCAWLILAMTTANLGIALRQKW HHHHHHHHHHHHCCHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MFAPMLIFLLISVVGRSRYPAESDTPAVDGGAR HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA