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The map label for this gene is ccmH [H]

Identifier: 110833699

GI number: 110833699

Start: 932416

End: 932853

Strand: Direct

Name: ccmH [H]

Synonym: ABO_0838

Alternate gene names: 110833699

Gene position: 932416-932853 (Clockwise)

Preceding gene: 110833698

Following gene: 110833700

Centisome position: 29.88

GC content: 50.68

Gene sequence:

>438_bases
ATGCTACGTATTGTCTTGTTGCTCACCTTGTCCATGTCAGCTTTTGCCGCTATCGATGTTTACCAGTTCGATAATCAGCA
GCAGGAGCAGCGTTTTCGTATCCTTTCAGAAGAGCTGCGTTGCCCGAAATGTCAGAACCAAAGCATCGCCGATTCGGATG
CGGGTATCGCCCAGGACATGCGTACGCGGGTGCATACCATGATTCTGGAAGGCAAGAGCGATGAACAGATCGTTGATTAT
TTTGTTTCCCGCTATGGAGACTTTGTCAGCTATCGGCCACCAGTGAATGCCGGCACCTCGATCCTGTGGCTAGGGCCAAT
ACTGTTATTGCTGGGCGGTGCCGTTTTGATCGTGTTGTTGCTGCGAAAAGCCAGCCGTAAGGCCGCACTGGAAGAACAGA
AATTGCAGAATAAAGAGCCGGGAGAGGGAACAAAATGA

Upstream 100 bases:

>100_bases
TCGTATTGCGCCATGCGGGTGATCTGAATGCCCGTGTTTGGGAAGAAAAATTCCTGCCGTTACTGCCCGCTCAGGCGGGG
CAGGGTAAGGGGGGCCAATA

Downstream 100 bases:

>100_bases
TGTTGTGGGTGATGTCGCTGGTTCTGTTACTGATATTGGCTGCCATGCTGTGGTTGATGTGGCGGAGTGAAGCCCGCAAG
GCCGGCAAAAACATGTCCGG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLRIVLLLTLSMSAFAAIDVYQFDNQQQEQRFRILSEELRCPKCQNQSIADSDAGIAQDMRTRVHTMILEGKSDEQIVDY
FVSRYGDFVSYRPPVNAGTSILWLGPILLLLGGAVLIVLLLRKASRKAALEEQKLQNKEPGEGTK

Sequences:

>Translated_145_residues
MLRIVLLLTLSMSAFAAIDVYQFDNQQQEQRFRILSEELRCPKCQNQSIADSDAGIAQDMRTRVHTMILEGKSDEQIVDY
FVSRYGDFVSYRPPVNAGTSILWLGPILLLLGGAVLIVLLLRKASRKAALEEQKLQNKEPGEGTK
>Mature_145_residues
MLRIVLLLTLSMSAFAAIDVYQFDNQQQEQRFRILSEELRCPKCQNQSIADSDAGIAQDMRTRVHTMILEGKSDEQIVDY
FVSRYGDFVSYRPPVNAGTSILWLGPILLLLGGAVLIVLLLRKASRKAALEEQKLQNKEPGEGTK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=113, Percent_Identity=54.8672566371681, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=43.9024390243902, Blast_Score=82, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16313; Mature: 16313

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIVLLLTLSMSAFAAIDVYQFDNQQQEQRFRILSEELRCPKCQNQSIADSDAGIAQDM
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RTRVHTMILEGKSDEQIVDYFVSRYGDFVSYRPPVNAGTSILWLGPILLLLGGAVLIVLL
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LRKASRKAALEEQKLQNKEPGEGTK
HHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLRIVLLLTLSMSAFAAIDVYQFDNQQQEQRFRILSEELRCPKCQNQSIADSDAGIAQDM
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
RTRVHTMILEGKSDEQIVDYFVSRYGDFVSYRPPVNAGTSILWLGPILLLLGGAVLIVLL
HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LRKASRKAALEEQKLQNKEPGEGTK
HHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA