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The map label for this gene is ccmF [H]

Identifier: 110833697

GI number: 110833697

Start: 929908

End: 931878

Strand: Direct

Name: ccmF [H]

Synonym: ABO_0836

Alternate gene names: 110833697

Gene position: 929908-931878 (Clockwise)

Preceding gene: 110833694

Following gene: 110833698

Centisome position: 29.8

GC content: 56.87

Gene sequence:

>1971_bases
GTGGCGGCAGAAATCGGGCATCTCTCTCTGTGGTTGGCACTGGCCGCAGCATTGTGTCTATCAGTGTTTCCGCTGATTGG
CGTTTATCGCAACATGCCCGCTTGGCAGTGGTACGCTCGACCGTTGGCCTGGATCCAATGGTTGGCAATGACCATCGCCA
TGGTGGCGTTAGGCTATTGCTTCTACATCAATGATTTCTCGGTGACCTATGTGGCTGGCCACAGTAACTCGGCATTGCCG
CTGGCGTACCGGTTGTCCGCCATTTGGGGCGGCCATGAAGGGTCCCTGTTGTTGTGGGGCTGGATGCTGTCCGGGTGGGC
CGCCATGGTCGGGCTGCTGAGTCGCAGTGTGCCGTTGCCCATGGTGAGCCGGGTATTGTCTGTCATGGGCATGATTGCCG
TGGGCTTTATGTTGTTCATGCTACTTACGTCCAATCCTTTCGATCGAAACCTGCCCTGGTTTCCGCTGGACGGTGCTGAC
CTGAACCCGCTGTTACAGGATCCGGGGCTGATCATTCACCCGCCGATGCTTTATATGGGCTACGTGGGCTTTGCGGTGGC
GTTTGCATTTGCCGTGGCGGGGTTGCTGATGGGCAACCTGGATCCTGCCTGGGCCCGCTGGGCGCGGCCGTGGACCACGG
TAGCGTGGAGCTTCCTAACGGTGGGCATCGCGCTGGGCTCCTGGTGGGCCTATTACGAGTTGGGCTGGGGCGGCTGGTGG
TTCTGGGACCCGGTGGAAAACGCTTCCTTGCTGCCGTGGTTAGCCGGGACCGCGCTCATTCACTCTTTAGCGGTGAGTGA
GAAACGCAATATGTTCCGTGCCTGGACAGTGTTGCTGGCGATCATTACGTTTTCCTTGAGCCTGTTGGGTACCTTCTTGG
TCCGCTCGGGGGTGCTAACGTCGGTTCATGCCTTTGCCAATGATCCGGCACGGGGGGCCTTTATCCTGGGTTTCCTTATC
GTCGTCGCCGGGGGGGCGTTAACGTTGTTTAGTCTGCGTGCGTCATCGTTACGCAGCAACACCGGATTCAAACCGGTATC
CCGGGAAGCTTTCCTGTTGGGTAATAACCTGATTTTGCTAACCGCCACTTCTGTGGTGTTGATGGGGACGCTATTTCCCC
TGATTGGCGAAGCGCTGGACATGAAAATCTCCATCCGCAGCCCATACTTCAATGGTTTCTTTGTGCCGTTGGCGCTGGTG
TTGATTCTATTGATGGTGCCGGGGGTGTTCAGTAACTGGAAACGTCAGGACGGCAATACCTTGCTTAAACGCATGGCCCT
GTTGGCTCCTGCTGCGATCATTGCGGGATGGTTCGGCTCTCGATTGCCCGATCCAAGCCCCTGGCAGGGCGTTTTGGCCA
TCATGCTGGCTTTGTTCCTGGTTTTTGCTCATATAGATGATGTAATCCGCCGGGCTAGCGCTTACAAGCAAGGTTTCGTT
ACGGGTTTGGGTAAGCTGGGGCGCGGTTACTGGGGCATGGTGTTCGCTCATTGTGGTTTGGCGGTGTTGATCGCCGGTAT
TACATTGGTGAGCTTCCATGAGGTGGAGCGGGACATTCGTATGGGGCCGGGCGATACGGCTGAACTGGGCCATTACACCT
TTGTGTTCGACAGCTTGGATAAATACAGCGGGCCCAACTTTGACGCTACCCGCGGCCATTTTCATGTCAGCCATGACGGG
GACCCGGTGGCGGTGATGCACCCGGAAAAACGGACTTATCACGCCAGTGGCCAGGTAATGACAGAAGCGGCGATTGATGC
TGGTTTCTGGCGCGACCTCTATGTGGCGCTAGGTGAGCCCTTGGATAACAGCGATGCTTGGGCTGTGCGTATTTATTTCA
AACCAGGCATTCGGTGGATCTGGCTGGGGGCATTGATTATGGCCCTTGGCGGCGCGCTGGCATTGACGGACAAACGTTAT
CGGCGCAACCGTTTTGCCACCAATGACGCAGGAGTGGCCAATGAAAGCTAA

Upstream 100 bases:

>100_bases
CTGGATCGCGCCAAAGCAGCGTCCGGCGGCCCTTTGACCAGTCAGAATCGCAAGTTGTTTATCCCAGTCGTGTATTTAGT
CGTATAAGTAAGGAGCTCTC

Downstream 100 bases:

>100_bases
TTCTCCCTGGGTGTTTTTGCCCTTGGTCGGGTTTGTGTTGCTAGCGGTGCTGTTGGCCAGTGGCTTGGGGCGCGATCCGC
AGGAACTGCCATCTGCTCTA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 655

Protein sequence:

>656_residues
MAAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYCFYINDFSVTYVAGHSNSALP
LAYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLPMVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGAD
LNPLLQDPGLIIHPPMLYMGYVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW
FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLTSVHAFANDPARGAFILGFLI
VVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILLTATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALV
LILLMVPGVFSNWKRQDGNTLLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFV
TGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLDKYSGPNFDATRGHFHVSHDG
DPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEPLDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRY
RRNRFATNDAGVANES

Sequences:

>Translated_656_residues
MAAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYCFYINDFSVTYVAGHSNSALP
LAYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLPMVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGAD
LNPLLQDPGLIIHPPMLYMGYVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW
FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLTSVHAFANDPARGAFILGFLI
VVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILLTATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALV
LILLMVPGVFSNWKRQDGNTLLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFV
TGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLDKYSGPNFDATRGHFHVSHDG
DPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEPLDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRY
RRNRFATNDAGVANES
>Mature_655_residues
AAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYCFYINDFSVTYVAGHSNSALPL
AYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLPMVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGADL
NPLLQDPGLIIHPPMLYMGYVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWWF
WDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLTSVHAFANDPARGAFILGFLIV
VAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILLTATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALVL
ILLMVPGVFSNWKRQDGNTLLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFVT
GLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLDKYSGPNFDATRGHFHVSHDGD
PVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEPLDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRYR
RNRFATNDAGVANES

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=647, Percent_Identity=51.7774343122102, Blast_Score=603, Evalue=1e-173,
Organism=Escherichia coli, GI1790511, Length=377, Percent_Identity=46.9496021220159, Blast_Score=290, Evalue=2e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72151; Mature: 72020

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FYINDFSVTYVAGHSNSALPLAYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLP
EEEECCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHH
MVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGADLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCEEECHHHHHH
YVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHEEEEECCCCEE
FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLT
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFANDPARGAFILGFLIVVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILL
HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEE
TATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALVLILLMVPGVFSNWKRQDGNT
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCHHH
LLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFV
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH
KYSGPNFDATRGHFHVSHDGDPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEP
HCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCC
LDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRYRRNRFATNDAGVANES
CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHEECHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AAEIGHLSLWLALAAALCLSVFPLIGVYRNMPAWQWYARPLAWIQWLAMTIAMVALGYC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FYINDFSVTYVAGHSNSALPLAYRLSAIWGGHEGSLLLWGWMLSGWAAMVGLLSRSVPLP
EEEECCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCHH
MVSRVLSVMGMIAVGFMLFMLLTSNPFDRNLPWFPLDGADLNPLLQDPGLIIHPPMLYMG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCCCEEECHHHHHH
YVGFAVAFAFAVAGLLMGNLDPAWARWARPWTTVAWSFLTVGIALGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCHHEEEEECCCCEE
FWDPVENASLLPWLAGTALIHSLAVSEKRNMFRAWTVLLAIITFSLSLLGTFLVRSGVLT
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVHAFANDPARGAFILGFLIVVAGGALTLFSLRASSLRSNTGFKPVSREAFLLGNNLILL
HHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEE
TATSVVLMGTLFPLIGEALDMKISIRSPYFNGFFVPLALVLILLMVPGVFSNWKRQDGNT
HHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCHHHHCCCCCCHHH
LLKRMALLAPAAIIAGWFGSRLPDPSPWQGVLAIMLALFLVFAHIDDVIRRASAYKQGFV
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLGKLGRGYWGMVFAHCGLAVLIAGITLVSFHEVERDIRMGPGDTAELGHYTFVFDSLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHH
KYSGPNFDATRGHFHVSHDGDPVAVMHPEKRTYHASGQVMTEAAIDAGFWRDLYVALGEP
HCCCCCCCCCCCEEEEECCCCEEEEECCCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCC
LDNSDAWAVRIYFKPGIRWIWLGALIMALGGALALTDKRYRRNRFATNDAGVANES
CCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHEECHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]