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The map label for this gene is ygcF [C]

Identifier: 110833622

GI number: 110833622

Start: 855224

End: 855865

Strand: Direct

Name: ygcF [C]

Synonym: ABO_0761

Alternate gene names: 110833622

Gene position: 855224-855865 (Clockwise)

Preceding gene: 110833621

Following gene: 110833623

Centisome position: 27.41

GC content: 54.67

Gene sequence:

>642_bases
GTGGAACTCCGCCTCACCGAAATATTCCATTCGTTACAAGGTGAATCCCGCACTGTGGGCCGCCCAACGGTATTCGTGCG
CCTAACGGGTTGCCCGCAACGCTGTGTTTGGTGTGATACAGAATATGCGTTCTCCGGGGGAGAAAAATGGAGTTTGGCCG
CTATTCTTGAGGAGGTGGCGGCTCTCGGTGCTCAGTATGTGACGGTGACGGGAGGAGAGCCCTTAGCGCAACCAAGCTGC
CTGCCATTGCTTAAGACGCTCTGTGATGAGGGTTATCAAGTAAGCCTGGAAACGGGCGGCGCCATGGATATTGCCGGTGT
GGACGAGCGGGTGTCTGTGGTGATGGATCTTAAAGCGCCGGGTTCAGGTGAACAGCACAATAATCGGCTGAGCAATATCG
CTCTACTCAAGGCTCACCACCAGGTGAAGTTCGTGCTGGCGGACCGCAAGGATTACGATTGGGCACGCTTTATGCTGGAT
CAGTACCAGTTACACCAGCGGGTCAGTGATGTGCTGTTCTCACCTGTGCAAGGGACTTTAGCCCCGGGAGACTTGGCGAA
TTGGATTGTCGAAGACCGTTTGCCGGTACGTTTCCAATTGCAGCTACATAAGCTTCTTTGGAATGATGCTCGCGGACGCT
GA

Upstream 100 bases:

>100_bases
GAGTAAGCCGCGCCTATCACCTTTATCTGCGTCACAGATGCGGGCAAAGGTGATAGAATCCGCGCATTTCCCCCCTCTTT
CAGGGCTTTCAGGAGATGTT

Downstream 100 bases:

>100_bases
TTAAGGTCAGACGCAAGATCTCTATGCGCCAAACGTGAAGTCTCACAACCCTAAAGCAAAGAGTAATGAAGGAACCTGCC
ATGAAAAAAGCCGTGGTGCT

Product: radical activating enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MELRLTEIFHSLQGESRTVGRPTVFVRLTGCPQRCVWCDTEYAFSGGEKWSLAAILEEVAALGAQYVTVTGGEPLAQPSC
LPLLKTLCDEGYQVSLETGGAMDIAGVDERVSVVMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLD
QYQLHQRVSDVLFSPVQGTLAPGDLANWIVEDRLPVRFQLQLHKLLWNDARGR

Sequences:

>Translated_213_residues
MELRLTEIFHSLQGESRTVGRPTVFVRLTGCPQRCVWCDTEYAFSGGEKWSLAAILEEVAALGAQYVTVTGGEPLAQPSC
LPLLKTLCDEGYQVSLETGGAMDIAGVDERVSVVMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLD
QYQLHQRVSDVLFSPVQGTLAPGDLANWIVEDRLPVRFQLQLHKLLWNDARGR
>Mature_213_residues
MELRLTEIFHSLQGESRTVGRPTVFVRLTGCPQRCVWCDTEYAFSGGEKWSLAAILEEVAALGAQYVTVTGGEPLAQPSC
LPLLKTLCDEGYQVSLETGGAMDIAGVDERVSVVMDLKAPGSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLD
QYQLHQRVSDVLFSPVQGTLAPGDLANWIVEDRLPVRFQLQLHKLLWNDARGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=126, Percent_Identity=31.7460317460317, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23792; Mature: 23792

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRLTEIFHSLQGESRTVGRPTVFVRLTGCPQRCVWCDTEYAFSGGEKWSLAAILEEVA
CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEECCHHCCCCCCCCHHHHHHHHHH
ALGAQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAMDIAGVDERVSVVMDLKAP
HCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEEEEECCC
GSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLDQYQLHQRVSDVLFSPVQGTL
CCCCCCCCHHHHHHEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APGDLANWIVEDRLPVRFQLQLHKLLWNDARGR
CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCC
>Mature Secondary Structure
MELRLTEIFHSLQGESRTVGRPTVFVRLTGCPQRCVWCDTEYAFSGGEKWSLAAILEEVA
CCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEECCHHCCCCCCCCHHHHHHHHHH
ALGAQYVTVTGGEPLAQPSCLPLLKTLCDEGYQVSLETGGAMDIAGVDERVSVVMDLKAP
HCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEEEEEECCC
GSGEQHNNRLSNIALLKAHHQVKFVLADRKDYDWARFMLDQYQLHQRVSDVLFSPVQGTL
CCCCCCCCHHHHHHEEEECCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
APGDLANWIVEDRLPVRFQLQLHKLLWNDARGR
CCCHHHHHHHHCCCCEEEHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]